Miyakogusa Predicted Gene

Lj0g3v0066079.2
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr0
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1JBB1_SOYBN 2115 83.6 88.3 (tr|I1JBB1) Uncharacterized protein OS=Glycine max PE=3 SV=1
TAIR_pep AT3G62150.1 1794 71.5 83.2 | Symbols: PGP21 | P-glycoprotein 21 | chr3:23008755-23013579 REVERSE LENGTH=1296
Medicago Medtr1g086080.2 2108 83.5 87.8 | ABC transporter B family protein | HC | chr1:38528582-38521884 | 20130731
Soybean Glyma02g01100.1 2115 83.6 88.3  
LJGI gnl|LJGI|TC62656 2353 99.9 99.9 similar to UniRef100_A7Q0Z8 Cluster: Chromosome chr7 scaffold_42, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr7 scaffold_42, whole genome shotgun sequence - Vitis vinifera (Grape), partial (30%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj0g3v0066079.2 length: 1280 aa.
IPR001140 ABC transporter, transmembrane domain
method AccNumber shortName E-value location
Molecular Function GO:0005524 ATP binding    
Biological Process GO:0006810 transport    
Cellular Component GO:0016021 integral to membrane    
Molecular Function GO:0042626 ATPase activity, coupled to transmembrane movement of substances    
Biological Process GO:0055085 transmembrane transport    
HMMPfam PF00664 ABC_membrane 6.7e-48 57-333
713-983
IPR003439 ABC transporter-like
Molecular Function GO:0005524 ATP binding    
Molecular Function GO:0016887 ATPase activity    
HMMPfam PF00005 ABC_tran 1.7e-23 422-547
1077-1203
ProfileScan PS50893 ABC_TRANSPORTER_2 24.550 380-616
1035-1272
IPR003593 AAA+ ATPase domain
Molecular Function GO:0000166 nucleotide binding    
Molecular Function GO:0017111 nucleoside-triphosphatase activity    
HMMSmart SM00382 ATPases 1.8e-17 407-593
1062-1255
IPR011527 ABC transporter, transmembrane domain, type 1
Molecular Function GO:0005524 ATP binding    
Biological Process GO:0006810 transport    
Cellular Component GO:0016021 integral to membrane    
Molecular Function GO:0042626 ATPase activity, coupled to transmembrane movement of substances    
Biological Process GO:0055085 transmembrane transport    
superfamily SSF90123 ABC 1.7e-61 35-537
692-1020
IPR017871 ABC transporter, conserved site
Molecular Function GO:0005524 ATP binding    
Molecular Function GO:0016887 ATPase activity    
PatternScan PS00211 ABC_TRANSPORTER_1 NA 519-533
1175-1189
IPR017940 ABC transporter, integral membrane type 1
ProfileScan PS50929 ABC_TM1F 44.902 59-345
714-1000
IPR027417 P-loop containing nucleoside triphosphate hydrolase
superfamily SSF52540 P-loop 3.7e-67 1035-1258
380-602
no_ID  
Gene3D G3DSA:1.20.1560.10 no description 1.1e-50 44-362
700-1017
Gene3D G3DSA:3.40.50.300 no description 6.2e-85 380-611
1034-1267
HMMPanther PTHR24222 FAMILY 0 32-1279
HMMPanther PTHR24222:SF3 SUBFAMILY 0 32-1279
Seg seg seg NA 25-38
185-197
342-350
637-674
935-950
Putative transmembrane regions
  From To
TM segments
SOSUI		 56 78
102 124
180 202
208 230
284 306
313 335
710 732
764 786
823 845
851 873
936 958
975 996
Wolf-PSORT
Lj0g3v0066079.2	plas 13
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj0g3v0066079.2