Miyakogusa Predicted Gene

Lj0g3v0062309.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr0
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL K7LHU1_SOYBN 1280 60.8 71.7 (tr|K7LHU1) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep AT1G19485.2 500 45.2 60.5 | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr1:6747167-6751443 FORWARD LENGTH=815
Medicago Medtr1g060580.1 896 61.9 72.4 | transducin/WD40 repeat protein | HC | chr1:26357922-26370061 | 20130731
Soybean Glyma10g07890.1 651 54.1 64.9  
LJGI gnl|LJGI|TC61076 1086 100.0 100.0  
A list of protein families, domains and functional sites (searches in InterPro)
Lj0g3v0062309.1 length: 1062 aa.
IPR001680 WD40 repeat
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
HMMPfam PF00400 WD40 0.021 718-760
HMMSmart SM00320 WD40 63 586-636
653-705
716-760
764-803
824-861
IPR015943 WD40/YVTN repeat-like-containing domain
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:2.130.10.10 no description 1.6e-17 589-870
IPR017956 AT hook, DNA-binding motif
Molecular Function GO:0003677 DNA binding    
HMMSmart SM00384 DNA 44 238-250
258-270
300-312
320-332
362-374
382-394
438-449
457-469
IPR017986 WD40-repeat-containing domain
Molecular Function GO:0005515 protein binding    
superfamily SSF50978 WD40 5.6e-19 601-861
IPR020478 AT hook-like
FPrintScan PR00929 ATHOOK 9.5e-09 258-268
318-329
380-390
no_ID  
HMMPanther PTHR31628 FAMILY 9.7e-25 51-267
Seg seg seg NA 19-35
Wolf-PSORT
Lj0g3v0062309.1	nucl 14
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj0g3v0062309.1