Miyakogusa Predicted Gene
- Lj0g3v0061899.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr0
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
C6TBN8_SOYBN |
209 |
77.7 |
83.8 |
(tr|C6TBN8) Putative uncharacterized protein OS=Glycine max PE=2 SV=1 |
| TAIR_pep |
AT2G35190.1 |
196 |
71.2 |
81.1 |
| Symbols: NPSN11, ATNPSN11, NSPN11 | novel plant snare 11 | chr2:14831087-14832979 FORWARD LENGTH=265 |
| Medicago |
Medtr4g099140.1 |
201 |
74.8 |
82.4 |
| novel plant SNARE-like protein | HC | chr4:41060024-41054160 | 20130731 |
| Soybean |
Glyma17g15990.1 |
208 |
78.3 |
82.9 |
|
| LJGI |
gnl|LJGI|TC80301 |
222 |
99.2 |
99.2 |
similar to UniRef100_Q944A9 Cluster: Novel plant SNARE 11; n=1; Arabidopsis thaliana|Rep: Novel plant SNARE 11 - Arabidopsis thaliana (Mouse-ear cress), partial (12%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj0g3v0061899.1 |
length: 131 aa. |
| IPR000727 |
Target SNARE coiled-coil domain |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0005515 |
protein binding |
|
|
| HMMSmart |
SM00397 |
Helical |
9e-11 |
6-73 |
| ProfileScan |
PS50192 |
T_SNARE |
12.078 |
11-73 |
| IPR005606 |
Sec20 |
| HMMPfam |
PF03908 |
Sec20 |
6.5e-08 |
19-101 |
| no_ID |
|
| Gene3D |
G3DSA:1.20.5.110 |
no description |
1.1e-17 |
12-75 |
| HMMPanther |
PTHR21230 |
VESICLE |
2.4e-60 |
1-108 |
| HMMPanther |
PTHR21230:SF2 |
NOVEL |
2.4e-60 |
1-108 |
| Seg |
seg |
seg |
NA |
86-103 |
- Putative transmembrane regions
| |
From |
To |
TM segments
SOSUI |
81 |
103 |
- Wolf-PSORT
Lj0g3v0061899.1 cyto 3, nucl 2, plas 2, extr 2, E.R. 2, golg 2, nucl_plas 2, golg_plas 2, E.R._plas 2
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj0g3v0061899.1 |
|