Miyakogusa Predicted Gene

Lj0g3v0060759.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr0
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL A2Q465_MEDTR 870 90.0 92.9 (tr|A2Q465) DEAD-box ATP-dependent RNA helicase OS=Medicago truncatula GN=MTR_040s0046 PE=3 SV=1
TAIR_pep AT1G55150.1 781 81.9 89.7 | Symbols: | DEA(D/H)-box RNA helicase family protein | chr1:20574634-20577141 FORWARD LENGTH=501
Medicago Medtr2g100230.1 870 90.0 92.9 | DEAD-box ATP-dependent RNA helicase-like protein | HC | chr2:43035445-43041856 | 20130731
Soybean Glyma08g20670.1 852 85.7 91.2  
LJGI gnl|LJGI|TC80913 1243 99.8 99.8 homologue to UniRef100_A2Q465 Cluster: Helicase, C-terminal; n=1; Medicago truncatula|Rep: Helicase, C-terminal - Medicago truncatula (Barrel medic), partial (38%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj0g3v0060759.1 length: 503 aa.
IPR000629 RNA helicase, ATP-dependent, DEAD-box, conserved site
method AccNumber shortName E-value location
Molecular Function GO:0003676 nucleic acid binding    
Molecular Function GO:0005524 ATP binding    
Molecular Function GO:0008026 ATP-dependent helicase activity    
PatternScan PS00039 DEAD_ATP_HELICASE NA 251-259
IPR001650 Helicase, C-terminal
Molecular Function GO:0003676 nucleic acid binding    
Molecular Function GO:0004386 helicase activity    
Molecular Function GO:0005524 ATP binding    
HMMPfam PF00271 Helicase_C 2.1e-26 363-439
HMMSmart SM00490 helicase 4.3e-34 358-439
ProfileScan PS51194 HELICASE_CTER 23.958 333-478
IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal
Molecular Function GO:0003676 nucleic acid binding    
Molecular Function GO:0005524 ATP binding    
Molecular Function GO:0008026 ATP-dependent helicase activity    
HMMPfam PF00270 DEAD 2.4e-46 123-294
IPR014001 Helicase, superfamily 1/2, ATP-binding domain
HMMSmart SM00487 DEAD-like 2.5e-69 118-321
ProfileScan PS51192 HELICASE_ATP_BIND_1 33.402 130-305
IPR014014 RNA helicase, DEAD-box type, Q motif
ProfileScan PS51195 Q_MOTIF 11.752 99-127
IPR027417 P-loop containing nucleoside triphosphate hydrolase
superfamily SSF52540 P-loop 3.7e-79 171-462
no_ID  
Gene3D G3DSA:3.40.50.300 no description 1.9e-59 84-319
320-476
HMMPanther PTHR24031 FAMILY 1.8e-296 38-477
HMMPanther PTHR24031:SF1 SUBFAMILY 1.8e-296 38-477
Seg seg seg NA 2-21
431-446
Wolf-PSORT
Lj0g3v0060759.1	cyto 10, chlo 3
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj0g3v0060759.1