Miyakogusa Predicted Gene

Lj0g3v0060589.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr0
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL K7M3N4_SOYBN 751 80.7 86.3 (tr|K7M3N4) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep AT2G19520.1 694 73.5 83.2 | Symbols: FVE, ACG1, MSI4, NFC4, NFC04, ATMSI4 | Transducin family protein / WD-40 repeat family protein | chr2:8456006-8459235 FORWARD LENGTH=507
Medicago Medtr2g100090.1 704 75.4 82.3 | nucleosome/chromatin assembly factor group protein | HC | chr2:42972259-42978885 | 20130731
Soybean Glyma13g42660.2 756 80.1 86.1  
LJGI gnl|LJGI|GO011803 553 99.6 99.6 similar to UniRef100_A2Q445 Cluster: WD40-like; n=1; Medicago truncatula|Rep: WD40-like - Medicago truncatula (Barrel medic), partial (26%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj0g3v0060589.1 length: 464 aa.
IPR001680 WD40 repeat
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
HMMPfam PF00400 WD40 2.7e-08 178-200
242-277
289-322
332-371
HMMSmart SM00320 WD40 12 160-200
237-277
281-322
331-371
390-437
ProfileScan PS50082 WD_REPEATS_2 12.547 244-286
289-322
338-380
IPR015943 WD40/YVTN repeat-like-containing domain
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:2.130.10.10 no description 2.2e-47 236-457
IPR017986 WD40-repeat-containing domain
Molecular Function GO:0005515 protein binding    
ProfileScan PS50294 WD_REPEATS_REGION 21.911 244-380
superfamily SSF50978 WD40 3.8e-45 3-437
IPR022052 Histone-binding protein RBBP4
HMMPfam PF12265 CAF1C_H4-bd 8.5e-21 18-86
no_ID  
Coil coil coiled-coil NA 6-27
HMMPanther PTHR22850 WD40 2.8e-273 8-460
HMMPanther PTHR22850:SF14 WD-40 2.8e-273 8-460
Seg seg seg NA 2-12
418-432
Wolf-PSORT
Lj0g3v0060589.1	nucl 6, cyto 5, chlo 1, plas 1, pero 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj0g3v0060589.1