database | Accession | Score | Iden (%) |
Posi (%) |
Definition |
---|---|---|---|---|---|
TrEMBL | I1NJ39_SOYBN | 1897 | 81.9 | 86.5 | (tr|I1NJ39) Uncharacterized protein OS=Glycine max PE=4 SV=2 |
TAIR_pep | AT5G27030.1 | 1583 | 71.0 | 80.5 | | Symbols: TPR3 | TOPLESS-related 3 | chr5:9508913-9515263 REVERSE LENGTH=1108 |
Medicago | Medtr1g083700.1 | 1885 | 80.9 | 86.9 | | topless-like protein | HC | chr1:37248575-37258577 | 20130731 |
Soybean | Glyma20g38230.1 | 1882 | 81.2 | 85.9 | |
LJGI | gnl|LJGI|TC77203 | 2091 | 99.8 | 99.8 | similar to UniRef100_Q2HW32 Cluster: Lissencephaly type-1-like homology motif; CTLH, C-terminal to LisH motif; Nitrous oxide reductase, N-terminal; WD40-like; Quinonprotein alcohol dehydrogenase-like; n=1; Medicago truncatula|Rep: Lissencephaly type-1-like homology motif; CTLH, C-terminal to LisH motif; Nitrous oxide reductase, N-terminal; WD40-like; Quinonprotein alcohol dehydrogenase-like - Medicago truncatula (Barrel medic), partial (31%) |
Lj0g3v0060309.1 | length: 1159 aa. | |||
IPR001680 | WD40 repeat | |||
---|---|---|---|---|
method | AccNumber | shortName | E-value | location |
Molecular Function | GO:0005515 | protein binding | ||
HMMPfam | PF00400 | WD40 | 7.5e-06 | 406-434 507-542 548-584 937-974 |
HMMSmart | SM00320 | WD40 | 42 | 395-434 456-495 501-542 544-585 634-674 853-889 892-932 935-974 1030-1066 1078-1121 |
ProfileScan | PS50082 | WD_REPEATS_2 | 13.082 | 401-443 508-542 652-683 942-983 |
IPR006594 | LisH dimerisation motif | |||
Molecular Function | GO:0005515 | protein binding | ||
HMMSmart | SM00667 | Lissencephaly | 0.00069 | 76-108 |
ProfileScan | PS50896 | LISH | 9.702 | 76-108 |
IPR006595 | CTLH, C-terminal LisH motif | |||
HMMSmart | SM00668 | C-terminal | 6.2e-14 | 106-164 |
ProfileScan | PS50897 | CTLH | 13.474 | 106-164 |
IPR015943 | WD40/YVTN repeat-like-containing domain | |||
Molecular Function | GO:0005515 | protein binding | ||
Gene3D | G3DSA:2.130.10.10 | no description | 2.9e-32 | 395-711 799-1123 |
IPR017986 | WD40-repeat-containing domain | |||
Molecular Function | GO:0005515 | protein binding | ||
ProfileScan | PS50294 | WD_REPEATS_REGION | 15.188 | 401-683 899-983 |
superfamily | SSF50978 | WD40 | 5e-37 | 401-713 851-1121 |
IPR019775 | WD40 repeat, conserved site | |||
PatternScan | PS00678 | WD_REPEATS_1 | NA | 529-543 |
no_ID | ||||
HMMPanther | PTHR22847 | WD40 | 0 | 167-1144 |
HMMPanther | PTHR22847:SF106SUBFAMILY | NOT | 0 | 167-1144 |
Seg | seg | seg | NA | 25-37 313-323 327-342 1144-1155 |
Lj0g3v0060309.1 nucl 5, E.R. 4, vacu 2, E.R._plas 2
entry_id | prediction | score | sppta | spptna | fp | profile |
---|---|---|---|---|---|---|
Lj0g3v0060309.1 |