Miyakogusa Predicted Gene

Lj0g3v0060299.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr0
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1NJ39_SOYBN 1071 87.8 92.5 (tr|I1NJ39) Uncharacterized protein OS=Glycine max PE=4 SV=2
TAIR_pep AT5G27030.1 909 75.8 84.5 | Symbols: TPR3 | TOPLESS-related 3 | chr5:9508913-9515263 REVERSE LENGTH=1108
Medicago Medtr1g083700.1 1070 88.2 91.6 | topless-like protein | HC | chr1:37248575-37258577 | 20130731
Soybean Glyma20g38230.1 1056 86.2 90.9  
LJGI gnl|LJGI|TC60845 1548 99.5 99.5 homologue to UniRef100_Q2HW32 Cluster: Lissencephaly type-1-like homology motif; CTLH, C-terminal to LisH motif; Nitrous oxide reductase, N-terminal; WD40-like; Quinonprotein alcohol dehydrogenase-like; n=1; Medicago truncatula|Rep: Lissencephaly type-1-like homology motif; CTLH, C-terminal to LisH motif; Nitrous oxide reductase, N-terminal; WD40-like; Quinonprotein alcohol dehydrogenase-like - Medicago truncatula (Barrel medic), partial (23%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj0g3v0060299.1 length: 574 aa.
IPR001680 WD40 repeat
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
HMMPfam PF00400 WD40 0.00017 341-374
449-482
488-524
HMMSmart SM00320 WD40 1.3e+02 335-374
397-435
439-482
484-525
528-571
ProfileScan PS50082 WD_REPEATS_2 8.771 341-383
448-482
IPR006594 LisH dimerisation motif
Molecular Function GO:0005515 protein binding    
HMMSmart SM00667 Lissencephaly 6.1e-05 4-36
ProfileScan PS50896 LISH 10.144 4-36
IPR006595 CTLH, C-terminal LisH motif
HMMSmart SM00668 C-terminal 3e-13 34-92
ProfileScan PS50897 CTLH 13.230 34-92
IPR015943 WD40/YVTN repeat-like-containing domain
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:2.130.10.10 no description 2e-28 329-560
IPR017986 WD40-repeat-containing domain
Molecular Function GO:0005515 protein binding    
ProfileScan PS50294 WD_REPEATS_REGION 11.418 341-491
IPR019775 WD40 repeat, conserved site
PatternScan PS00678 WD_REPEATS_1 NA 469-483
no_ID  
HMMPanther PTHR22847 WD40 5.7e-144 95-574
HMMPanther PTHR22847:SF106SUBFAMILY NOT 5.7e-144 95-574
Seg seg seg NA 242-272
superfamily SSF50960 TolB, 2.3e-31 325-562
Wolf-PSORT
Lj0g3v0060299.1	cyto 6, nucl 4, chlo 3, cyto_pero 3, cyto_E.R. 3
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj0g3v0060299.1