Miyakogusa Predicted Gene

Lj0g3v0060289.1

Related links:

Predicted Sequence Links:

Genome Sequence: Lj3.0_chr0

Full length sequence(192322135 bp) Sequence Cut

Init: Term:
reverse complement

Results of Blast2 searches (The best-hits are tabulated.):

database Accession Score Iden
(%) Posi
(%) Definition

TrEMBL G7I9E6_MEDTR 905 83.7 90.7 (tr|G7I9E6) WD repeat-containing protein OS=Medicago truncatula GN=MTR_1g083700 PE=4 SV=1

TAIR_pep AT5G27030.1 734 73.0 81.8 | Symbols: TPR3 | TOPLESS-related 3 | chr5:9508913-9515263 REVERSE LENGTH=1108

Medicago Medtr1g083700.1 905 83.7 90.7 | topless-like protein | HC | chr1:37248575-37258577 | 20130731

Soybean Glyma20g38230.1 904 84.5 89.7

LJGI gnl|LJGI|TC77203 1342 90.9 90.9 similar to UniRef100_Q2HW32 Cluster: Lissencephaly type-1-like homology motif; CTLH, C-terminal to LisH motif; Nitrous oxide reductase, N-terminal; WD40-like; Quinonprotein alcohol dehydrogenase-like; n=1; Medicago truncatula|Rep: Lissencephaly type-1-like homology motif; CTLH, C-terminal to LisH motif; Nitrous oxide reductase, N-terminal; WD40-like; Quinonprotein alcohol dehydrogenase-like - Medicago truncatula (Barrel medic), partial (31%)

A list of protein families, domains and functional sites (searches in InterPro)

Lj0g3v0060289.1 length: 514 aa.

IPR001680 WD40 repeat

method AccNumber shortName E-value location

Molecular Function GO:0005515 protein binding

HMMPfam PF00400 WD40 3.2e-06 291-328

HMMSmart SM00320 WD40 96 207-243
246-286
289-328
378-420
434-475

ProfileScan PS50082 WD_REPEATS_2 13.416 296-337

IPR015943 WD40/YVTN repeat-like-containing domain

Molecular Function GO:0005515 protein binding

Gene3D G3DSA:2.130.10.10 no description 2.2e-34 152-477

IPR017986 WD40-repeat-containing domain

Molecular Function GO:0005515 protein binding

ProfileScan PS50294 WD_REPEATS_REGION 15.267 253-337

superfamily SSF50978 WD40 1.5e-37 205-475

no_ID

HMMPanther PTHR22847 WD40 5.3e-187 1-498

HMMPanther PTHR22847:SF106SUBFAMILY NOT 5.3e-187 1-498

Seg seg seg NA 69-82
498-509

Wolf-PSORT

Lj0g3v0060289.1 cyto 12, chlo 1, nucl 1

PTS1 (Peroxisome targeting signal type 1)

entry_id prediction score sppta spptna fp profile

Lj0g3v0060289.1

Top Kazusa DNA Research Institute

database	Accession	Score	Iden (%)	Posi (%)	Definition
TrEMBL	G7I9E6_MEDTR	905	83.7	90.7	(tr\|G7I9E6) WD repeat-containing protein OS=Medicago truncatula GN=MTR_1g083700 PE=4 SV=1
TAIR_pep	AT5G27030.1	734	73.0	81.8	\| Symbols: TPR3 \| TOPLESS-related 3 \| chr5:9508913-9515263 REVERSE LENGTH=1108
Medicago	Medtr1g083700.1	905	83.7	90.7	\| topless-like protein \| HC \| chr1:37248575-37258577 \| 20130731
Soybean	Glyma20g38230.1	904	84.5	89.7
LJGI	gnl\|LJGI\|TC77203	1342	90.9	90.9	similar to UniRef100_Q2HW32 Cluster: Lissencephaly type-1-like homology motif; CTLH, C-terminal to LisH motif; Nitrous oxide reductase, N-terminal; WD40-like; Quinonprotein alcohol dehydrogenase-like; n=1; Medicago truncatula\|Rep: Lissencephaly type-1-like homology motif; CTLH, C-terminal to LisH motif; Nitrous oxide reductase, N-terminal; WD40-like; Quinonprotein alcohol dehydrogenase-like - Medicago truncatula (Barrel medic), partial (31%)

IPR001680	WD40 repeat
Lj0g3v0060289.1				length: 514 aa.
method	AccNumber	shortName	E-value	location
Molecular Function	GO:0005515	protein binding
HMMPfam	PF00400	WD40	3.2e-06	291-328
HMMSmart	SM00320	WD40	96	207-243 246-286 289-328 378-420 434-475
ProfileScan	PS50082	WD_REPEATS_2	13.416	296-337
IPR015943	WD40/YVTN repeat-like-containing domain
Molecular Function	GO:0005515	protein binding
Gene3D	G3DSA:2.130.10.10	no description	2.2e-34	152-477
IPR017986	WD40-repeat-containing domain
Molecular Function	GO:0005515	protein binding
ProfileScan	PS50294	WD_REPEATS_REGION	15.267	253-337
superfamily	SSF50978	WD40	1.5e-37	205-475
no_ID
HMMPanther	PTHR22847	WD40	5.3e-187	1-498
HMMPanther	PTHR22847:SF106SUBFAMILY	NOT	5.3e-187	1-498
Seg	seg	seg	NA	69-82 498-509