Miyakogusa Predicted Gene

Lj0g3v0060129.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr0
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1NJ45_SOYBN 578 87.8 91.4 (tr|I1NJ45) Uncharacterized protein OS=Glycine max PE=3 SV=1
TAIR_pep AT3G05710.2 511 74.9 85.7 | Symbols: SYP43, ATSYP43 | syntaxin of plants 43 | chr3:1685262-1687229 FORWARD LENGTH=331
Medicago Medtr1g083790.1 567 87.6 93.3 | syntaxin of plants protein | HC | chr1:37298710-37303799 | 20130731
Soybean Glyma20g38300.1 578 87.8 91.4  
LJGI gnl|LJGI|CN825133 1346 99.0 99.0 similar to UniRef100_Q9SUJ1 Cluster: Syntaxin-43; n=1; Arabidopsis thaliana|Rep: Syntaxin-43 - Arabidopsis thaliana (Mouse-ear cress), partial (66%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj0g3v0060129.1 length: 323 aa.
IPR000727 Target SNARE coiled-coil domain
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
HMMPfam PF05739 SNARE 2.5e-17 232-294
HMMSmart SM00397 Helical 4.6e-12 222-289
ProfileScan PS50192 T_SNARE 16.616 227-289
IPR006011 Syntaxin, N-terminal
Cellular Component GO:0016020 membrane    
HMMPfam PF00804 Syntaxin 2.3e-11 75-170
HMMSmart SM00503 Syntaxin 5.1e-18 68-183
IPR006012 Syntaxin/epimorphin, conserved site
Molecular Function GO:0005484 SNAP receptor activity    
Biological Process GO:0006886 intracellular protein transport    
Cellular Component GO:0016020 membrane    
PatternScan PS00914 SYNTAXIN NA 233-272
IPR010989 t-SNARE
Cellular Component GO:0016020 membrane    
Biological Process GO:0016192 vesicle-mediated transport    
superfamily SSF47661 t-snare 1.2e-39 71-282
no_ID  
Coil coil coiled-coil NA 81-102
Gene3D G3DSA:1.20.58.70 no description 3.1e-41 73-282
HMMPanther PTHR19957 SYNTAXIN 1.7e-163 4-322
HMMPanther PTHR19957:SF60 SUBFAMILY 1.7e-163 4-322
Seg seg seg NA 23-33
Putative transmembrane regions
  From To
TM segments
SOSUI		 298 320
Wolf-PSORT
Lj0g3v0060129.1	chlo 7, mito 3, golg 2, mito_plas 2
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj0g3v0060129.1