Miyakogusa Predicted Gene

Lj0g3v0059869.1

Related links:

Predicted Sequence Links:

Genome Sequence: Lj3.0_chr0

Full length sequence(192322135 bp) Sequence Cut

Init: Term:
reverse complement

Results of Blast2 searches (The best-hits are tabulated.):

database Accession Score Iden
(%) Posi
(%) Definition

TrEMBL I1LSG6_SOYBN 498 60.0 73.8 (tr|I1LSG6) Uncharacterized protein OS=Glycine max PE=4 SV=2

TAIR_pep AT2G42620.1 385 50.9 66.6 | Symbols: MAX2, ORE9, PPS | RNI-like superfamily protein | chr2:17756170-17758251 FORWARD LENGTH=693

Medicago Medtr4g080020.1 472 59.5 71.2 | F-box protein MAX2 | HC | chr4:30974880-30977678 | 20130731

Soybean Glyma06g43000.1 482 59.5 74.0

LJGI gnl|LJGI|TC66636 720 99.7 99.7 similar to UniRef100_Q208P4 Cluster: RAMOSUS4; n=1; Pisum sativum|Rep: RAMOSUS4 - Pisum sativum (Garden pea), partial (18%)

A list of protein families, domains and functional sites (searches in InterPro)

Lj0g3v0059869.1 length: 509 aa.

IPR006553 Leucine-rich repeat, cysteine-containing subtype

method AccNumber shortName E-value location

HMMSmart SM00367 Leucine-rich 19 156-187
286-311
312-337

IPR011889 Bacterial surface protein 26-residue repeat

HMMTigr TIGR02167 Liste_lipo_26: 0.00031 93-108

no_ID

Gene3D G3DSA:3.80.10.10 no description 3.9e-25 431-432

HMMPanther PTHR23125 F-BOX/LEUCINE 2.2e-26 86-360

HMMPfam PF13516 LRR_6 0.39 286-309

Seg seg seg NA 10-62
68-80

superfamily SSF52047 RNI-like 1.1e-20 120-477

Wolf-PSORT

Lj0g3v0059869.1 chlo 13

PTS1 (Peroxisome targeting signal type 1)

entry_id prediction score sppta spptna fp profile

Lj0g3v0059869.1

Top Kazusa DNA Research Institute

database	Accession	Score	Iden (%)	Posi (%)	Definition
TrEMBL	I1LSG6_SOYBN	498	60.0	73.8	(tr\|I1LSG6) Uncharacterized protein OS=Glycine max PE=4 SV=2
TAIR_pep	AT2G42620.1	385	50.9	66.6	\| Symbols: MAX2, ORE9, PPS \| RNI-like superfamily protein \| chr2:17756170-17758251 FORWARD LENGTH=693
Medicago	Medtr4g080020.1	472	59.5	71.2	\| F-box protein MAX2 \| HC \| chr4:30974880-30977678 \| 20130731
Soybean	Glyma06g43000.1	482	59.5	74.0
LJGI	gnl\|LJGI\|TC66636	720	99.7	99.7	similar to UniRef100_Q208P4 Cluster: RAMOSUS4; n=1; Pisum sativum\|Rep: RAMOSUS4 - Pisum sativum (Garden pea), partial (18%)

IPR006553	Leucine-rich repeat, cysteine-containing subtype
Lj0g3v0059869.1				length: 509 aa.
method	AccNumber	shortName	E-value	location
HMMSmart	SM00367	Leucine-rich	19	156-187 286-311 312-337
IPR011889	Bacterial surface protein 26-residue repeat
HMMTigr	TIGR02167	Liste_lipo_26:	0.00031	93-108
no_ID
Gene3D	G3DSA:3.80.10.10	no description	3.9e-25	431-432
HMMPanther	PTHR23125	F-BOX/LEUCINE	2.2e-26	86-360
HMMPfam	PF13516	LRR_6	0.39	286-309
Seg	seg	seg	NA	10-62 68-80
superfamily	SSF52047	RNI-like	1.1e-20	120-477