Miyakogusa Predicted Gene
- Lj0g3v0058059.2
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr0
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
K7KB99_SOYBN |
476 |
56.2 |
70.5 |
(tr|K7KB99) Uncharacterized protein OS=Glycine max PE=4 SV=1 |
| TAIR_pep |
AT2G30800.1 |
353 |
47.7 |
64.9 |
| Symbols: HVT1, ATVT-1 | helicase in vascular tissue and tapetum | chr2:13120585-13126635 REVERSE LENGTH=1299 |
| Medicago |
Medtr5g090430.1 |
448 |
55.1 |
69.6 |
| ATP-dependent RNA helicase, putative | HC | chr5:39384456-39392519 | 20130731 |
| Soybean |
Glyma02g45220.1 |
473 |
57.2 |
71.6 |
|
| LJGI |
--No_Hits--
|
|
|
|
|
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj0g3v0058059.2 |
length: 413 aa. |
| IPR007502 |
Helicase-associated domain |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0004386 |
helicase activity |
|
|
| HMMPfam |
PF04408 |
HA2 |
1.1e-15 |
37-129 |
| HMMSmart |
SM00847 |
Helicase |
5.6e-15 |
37-132 |
| IPR027417 |
P-loop containing nucleoside triphosphate hydrolase |
| superfamily |
SSF52540 |
P-loop |
1.1e-07 |
1-107 |
| no_ID |
|
| HMMPanther |
PTHR18934 |
ATP-DEPENDENT |
4.8e-63 |
1-339 |
| HMMPanther |
PTHR18934:SF68 |
SUBFAMILY |
4.8e-63 |
1-339 |
- Wolf-PSORT
Lj0g3v0058059.2 cyto 4, nucl 3, golg 3, chlo 1, mito 1, plas 1, E.R. 1, chlo_mito 1, E.R._plas 1, mito_plas 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj0g3v0058059.2 |
|