Miyakogusa Predicted Gene

Lj0g3v0057749.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr0
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1K3M4_SOYBN 743 78.1 82.3 (tr|I1K3M4) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep AT2G19540.1 627 67.9 78.3 | Symbols: | Transducin family protein / WD-40 repeat family protein | chr2:8461804-8464347 FORWARD LENGTH=469
Medicago Medtr8g080700.1 731 77.2 81.2 | glutamate-rich WD repeat protein | HC | chr8:34739832-34734055 | 20130731
Soybean Glyma05g28040.2 743 78.1 82.3  
LJGI gnl|LJGI|TC61946 1263 99.8 99.8 similar to UniRef100_A7PE86 Cluster: Chromosome chr11 scaffold_13, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr11 scaffold_13, whole genome shotgun sequence - Vitis vinifera (Grape), partial (43%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj0g3v0057749.1 length: 473 aa.
IPR001680 WD40 repeat
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
HMMPfam PF00400 WD40 9.5e-05 226-256
270-303
312-345
358-394
HMMSmart SM00320 WD40 5.9e-05 155-194
217-256
258-303
307-347
354-394
ProfileScan PS50082 WD_REPEATS_2 12.246 270-312
361-403
IPR015943 WD40/YVTN repeat-like-containing domain
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:2.130.10.10 no description 6.7e-44 160-455
IPR017986 WD40-repeat-containing domain
Molecular Function GO:0005515 protein binding    
ProfileScan PS50294 WD_REPEATS_REGION 26.103 223-403
superfamily SSF50978 WD40 3.8e-41 162-455
IPR022052 Histone-binding protein RBBP4
HMMPfam PF12265 CAF1C_H4-bd 1.5e-17 47-115
no_ID  
HMMPanther PTHR22850 WD40 5.6e-203 14-471
HMMPanther PTHR22850:SF6 GLUTAMATE 5.6e-203 14-471
Seg seg seg NA 10-28
129-151
401-413
Wolf-PSORT
Lj0g3v0057749.1	nucl 7.5, cyto_nucl 5, mito 4, cyto 1.5
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj0g3v0057749.1