Miyakogusa Predicted Gene
- Lj0g3v0057319.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr0
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
K7LJK9_SOYBN |
135 |
73.0 |
82.0 |
(tr|K7LJK9) Uncharacterized protein OS=Glycine max PE=4 SV=1 |
| TAIR_pep |
AT3G05380.4 |
96.7 |
51.6 |
70.3 |
| Symbols: ALY2 | DIRP ;Myb-like DNA-binding domain | chr3:1540562-1546139 FORWARD LENGTH=1052 |
| Medicago |
Medtr1g083040.5 |
134 |
71.9 |
80.9 |
| always EARLY-like protein | HC | chr1:36931175-36944066 | 20130731 |
| Soybean |
Glyma10g29480.2 |
135 |
73.0 |
82.0 |
|
| LJGI |
--No_Hits--
|
|
|
|
|
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj0g3v0057319.1 |
length: 90 aa. |
| IPR001005 |
SANT/Myb domain |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0003682 |
chromatin binding |
|
|
| HMMPfam |
PF00249 |
Myb_DNA-binding |
5.6e-09 |
46-81 |
| HMMSmart |
SM00717 |
SANT |
0.0069 |
43-89 |
| IPR009057 |
Homeodomain-like |
| Molecular Function |
GO:0003677 |
DNA binding |
|
|
| Gene3D |
G3DSA:1.10.10.60 |
no description |
4.3e-06 |
45-82 |
| superfamily |
SSF46689 |
Homeodomain-like |
5.5e-10 |
28-89 |
| IPR017884 |
SANT domain |
| ProfileScan |
PS51293 |
SANT |
11.138 |
42-90 |
| no_ID |
|
| HMMPanther |
PTHR21689 |
LIN-9 |
2.8e-39 |
1-89 |
| HMMPanther |
PTHR21689:SF2 |
LIN-9-RELATED |
2.8e-39 |
1-89 |
| Seg |
seg |
seg |
NA |
31-43 |
- Wolf-PSORT
Lj0g3v0057319.1 nucl 6, cyto 3, cysk_nucl 3, chlo 2, mito 2, chlo_mito 2, cyto_plas 2
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj0g3v0057319.1 |
|