- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
G7JB15_MEDTR |
114 |
47.7 |
62.1 |
(tr|G7JB15) F-box/LRR-repeat protein OS=Medicago truncatula GN=MTR_3g107100 PE=4 SV=1 |
| TAIR_pep |
AT2G42720.1 |
74.7 |
41.4 |
55.4 |
| Symbols: | FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein | chr2:17785653-17787211 FORWARD LENGTH=443 |
| Medicago |
Medtr3g107100.2 |
114 |
47.7 |
62.1 |
| F-box/RNI/FBD-like domain protein | HC | chr3:49447193-49444342 | 20130731 |
| Soybean |
Glyma08g46590.2 |
92.4 |
43.0 |
55.7 |
|
| LJGI |
gnl|LJGI|TC75420 |
428 |
99.5 |
99.5 |
similar to UniRef100_A7QK60 Cluster: Chromosome chr19 scaffold_111, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr19 scaffold_111, whole genome shotgun sequence - Vitis vinifera (Grape), partial (12%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj0g3v0056799.2 |
length: 156 aa. |
| IPR001810 |
F-box domain, cyclin-like |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0005515 |
protein binding |
|
|
| HMMPfam |
PF00646 |
F-box |
4.3e-06 |
4-43 |
| HMMSmart |
SM00256 |
A |
0.0011 |
8-48 |
| ProfileScan |
PS50181 |
FBOX |
9.497 |
2-52 |
| superfamily |
SSF81383 |
F-box |
3.4e-10 |
3-41 |
| no_ID |
|
| Gene3D |
G3DSA:1.20.1280.50 |
no description |
3.6e-06 |
2-41 |
| HMMPanther |
PTHR32212 |
FAMILY |
7.1e-20 |
2-152 |
- Putative transmembrane regions
| |
From |
To |
TM segments
SOSUI |
108 |
130 |
| 132 |
154 |
- Wolf-PSORT
Lj0g3v0056799.2 cyto 7.5, cyto_nucl 5, chlo 2, nucl 1.5, plas 1, extr 1, golg 1, chlo_mito 1, golg_plas 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj0g3v0056799.2 |
|