Miyakogusa Predicted Gene

Lj0g3v0055669.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr0
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1N7R1_SOYBN 1231 79.8 84.6 (tr|I1N7R1) Uncharacterized protein OS=Glycine max PE=4 SV=2
TAIR_pep AT5G40890.1 1098 72.9 80.8 | Symbols: ATCLC-A, CLC-A, CLCA, ATCLCA | chloride channel A | chr5:16381645-16384999 REVERSE LENGTH=775
Medicago Medtr7g029345.1 1219 80.6 85.1 | ClC chloride channel family protein | HC | chr7:10395960-10400760 | 20130731
Soybean Glyma19g25680.1 1229 81.3 85.9  
LJGI gnl|LJGI|TC71827 1007 99.6 99.6 similar to UniRef100_Q0IJ86 Cluster: Chloride channel; n=1; Glycine max|Rep: Chloride channel - Glycine max (Soybean), partial (22%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj0g3v0055669.1 length: 784 aa.
IPR000644 Cystathionine beta-synthase, core
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
HMMPfam PF00571 CBS 0.00086 597-664
718-767
HMMSmart SM00116 Domain 1.2 605-664
718-771
ProfileScan PS51371 CBS 9.521 602-671
715-780
IPR001807 Chloride channel, voltage gated
Molecular Function GO:0005247 voltage-gated chloride channel activity    
Biological Process GO:0006821 chloride transport    
Cellular Component GO:0016020 membrane    
Biological Process GO:0055085 transmembrane transport    
FPrintScan PR00762 CLCHANNEL 4.3e-60 159-176
190-209
254-273
482-502
514-530
532-551
570-584
HMMPfam PF00654 Voltage_CLC 4.5e-89 146-564
IPR002251 Chloride channel ClC-plant
Molecular Function GO:0005247 voltage-gated chloride channel activity    
Biological Process GO:0006821 chloride transport    
Cellular Component GO:0016020 membrane    
FPrintScan PR01120 CLCHANNELPLT 3.4e-23 64-72
275-283
289-299
307-314
434-450
IPR014743 Chloride channel, core
Molecular Function GO:0005216 ion channel activity    
Biological Process GO:0055085 transmembrane transport    
Gene3D G3DSA:1.10.3080.10 no description 1.2e-123 438-589
superfamily SSF81340 Clc 3.2e-101 67-587
no_ID  
Gene3D G3DSA:3.10.580.10 no description 5.2e-10 702-767
HMMPanther PTHR11689 CHLORIDE 0 1-782
HMMPanther PTHR11689:SF11 CHLORIDE 0 1-782
Seg seg seg NA 13-23
333-349
432-445
546-558
631-642
671-682
superfamily SSF54631 CBS-domain 1.9e-05 688-767
584-674
Putative transmembrane regions
  From To
TM segments
SOSUI		 92 114
135 157
182 204
253 275
284 306
332 354
373 395
459 481
485 507
537 559
Wolf-PSORT
Lj0g3v0055669.1	plas 9, E.R. 2, golg 2
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj0g3v0055669.1