Miyakogusa Predicted Gene

Lj0g3v0054479.1

Related links:

Predicted Sequence Links:

Genome Sequence: Lj3.0_chr0

Full length sequence(192322135 bp) Sequence Cut

Init: Term:
reverse complement

Results of Blast2 searches (The best-hits are tabulated.):

database Accession Score Iden
(%) Posi
(%) Definition

TrEMBL I3SDP8_LOTJA 344 73.7 74.2 (tr|I3SDP8) Uncharacterized protein OS=Lotus japonicus PE=2 SV=1

TAIR_pep AT5G58250.1 159 54.2 62.7 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: thylakoid, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2488 (InterPro:IPR019616); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:23559558-23560372 FORWARD LENGTH=211

Medicago Medtr3g062920.1 223 53.0 58.1 | hypothetical protein | HC | chr3:28448457-28445861 | 20130731

Soybean Glyma11g31660.1 253 58.1 62.7

LJGI gnl|LJGI|TC68429 1221 97.5 97.5 similar to UniRef100_Q6NLE1 Cluster: At5g58250; n=1; Arabidopsis thaliana|Rep: At5g58250 - Arabidopsis thaliana (Mouse-ear cress), partial (61%)

A list of protein families, domains and functional sites (searches in InterPro)

Lj0g3v0054479.1 length: 236 aa.

IPR019616 Uncharacterised protein family Ycf54

method AccNumber shortName E-value location

HMMPfam PF10674 Ycf54 2.6e-30 102-191

no_ID

Seg seg seg NA 12-23
70-84
116-134
186-200

Wolf-PSORT

Lj0g3v0054479.1 chlo 14

PTS1 (Peroxisome targeting signal type 1)

entry_id prediction score sppta spptna fp profile

Lj0g3v0054479.1

Top Kazusa DNA Research Institute

database	Accession	Score	Iden (%)	Posi (%)	Definition
TrEMBL	I3SDP8_LOTJA	344	73.7	74.2	(tr\|I3SDP8) Uncharacterized protein OS=Lotus japonicus PE=2 SV=1
TAIR_pep	AT5G58250.1	159	54.2	62.7	\| Symbols: \| unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: thylakoid, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2488 (InterPro:IPR019616); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). \| chr5:23559558-23560372 FORWARD LENGTH=211
Medicago	Medtr3g062920.1	223	53.0	58.1	\| hypothetical protein \| HC \| chr3:28448457-28445861 \| 20130731
Soybean	Glyma11g31660.1	253	58.1	62.7
LJGI	gnl\|LJGI\|TC68429	1221	97.5	97.5	similar to UniRef100_Q6NLE1 Cluster: At5g58250; n=1; Arabidopsis thaliana\|Rep: At5g58250 - Arabidopsis thaliana (Mouse-ear cress), partial (61%)

IPR019616	Uncharacterised protein family Ycf54
Lj0g3v0054479.1				length: 236 aa.
method	AccNumber	shortName	E-value	location
HMMPfam	PF10674	Ycf54	2.6e-30	102-191
no_ID
Seg	seg	seg	NA	12-23 70-84 116-134 186-200