Miyakogusa Predicted Gene

Lj0g3v0054419.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr0
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)
Posi
(%)
Definition
TrEMBL K7MQ01_SOYBN 588 88.7 94.8 (tr|K7MQ01) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep AT1G31360.1 270 46.3 64.1 | Symbols: RECQL2, ATRECQ2, MED34 | RECQ helicase L2 | chr1:11232422-11237412 FORWARD LENGTH=705
Medicago Medtr3g063040.1 587 89.3 94.2 | ATP-dependent DNA helicase RecQ | HC | chr3:28524625-28534220 | 20130731
Soybean Glyma18g05570.1 563 88.3 94.6  
LJGI gnl|LJGI|TC73428 1063 100.0 100.0 similar to UniRef100_A7NXX6 Cluster: Chromosome chr6 scaffold_3, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr6 scaffold_3, whole genome shotgun sequence - Vitis vinifera (Grape), partial (51%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj0g3v0054419.1 length: 309 aa.
IPR001650 Helicase, C-terminal
method AccNumber shortName E-value location
Molecular Function GO:0003676 nucleic acid binding    
Molecular Function GO:0004386 helicase activity    
Molecular Function GO:0005524 ATP binding    
HMMPfam PF00271 Helicase_C 2.8e-19 213-289
HMMSmart SM00490 helicase 7.2e-27 208-289
ProfileScan PS51194 HELICASE_CTER 20.279 179-309
IPR004589 DNA helicase, ATP-dependent, RecQ type
Biological Process GO:0006310 DNA recombination    
Molecular Function GO:0008026 ATP-dependent helicase activity    
HMMTigr TIGR00614 recQ_fam: 3.7e-120 1-304
IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal
Molecular Function GO:0003676 nucleic acid binding    
Molecular Function GO:0005524 ATP binding    
Molecular Function GO:0008026 ATP-dependent helicase activity    
HMMPfam PF00270 DEAD 7.1e-15 1-141
IPR014001 Helicase, superfamily 1/2, ATP-binding domain
HMMSmart SM00487 DEAD-like 9.8e-09 1-171
ProfileScan PS51192 HELICASE_ATP_BIND_1 20.525 1-155
IPR027417 P-loop containing nucleoside triphosphate hydrolase
superfamily SSF52540 P-loop 1.7e-55 18-303
no_ID  
Gene3D G3DSA:3.40.50.300 no description 7.2e-40 1-159
160-304
HMMPanther PTHR13710 DNA 5e-157 1-309
HMMPanther PTHR13710:SF11 DNA 5e-157 1-309
Wolf-PSORT
Lj0g3v0054419.1	chlo 7, nucl 2, cyto 2, extr 2, cyto_nucl 2
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj0g3v0054419.1