Miyakogusa Predicted Gene

Lj0g3v0048519.2
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr0
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL K7LE00_SOYBN 1117 87.5 91.0 (tr|K7LE00) Uncharacterized protein OS=Glycine max PE=3 SV=1
TAIR_pep AT4G25450.1 911 67.4 80.0 | Symbols: ATNAP8, NAP8 | non-intrinsic ABC protein 8 | chr4:13009845-13013912 REVERSE LENGTH=714
Medicago Medtr6g465300.1 1106 82.8 88.1 | ABC transporter family protein | HC | chr6:23141535-23133971 | 20130731
Soybean Glyma09g27220.1 638 88.2 91.3  
LJGI gnl|LJGI|TC58718 1403 99.9 99.9 similar to UniRef100_Q8LPQ6 Cluster: Non-intrinsic ABC protein 8; n=3; Arabidopsis thaliana|Rep: Non-intrinsic ABC protein 8 - Arabidopsis thaliana (Mouse-ear cress), partial (24%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj0g3v0048519.2 length: 708 aa.
IPR001140 ABC transporter, transmembrane domain
method AccNumber shortName E-value location
Molecular Function GO:0005524 ATP binding    
Biological Process GO:0006810 transport    
Cellular Component GO:0016021 integral to membrane    
Molecular Function GO:0042626 ATPase activity, coupled to transmembrane movement of substances    
Biological Process GO:0055085 transmembrane transport    
HMMPfam PF00664 ABC_membrane 2.6e-31 110-375
IPR003439 ABC transporter-like
Molecular Function GO:0005524 ATP binding    
Molecular Function GO:0016887 ATPase activity    
HMMPfam PF00005 ABC_tran 1.9e-21 506-633
ProfileScan PS50893 ABC_TRANSPORTER_2 24.470 464-702
IPR003593 AAA+ ATPase domain
Molecular Function GO:0000166 nucleotide binding    
Molecular Function GO:0017111 nucleoside-triphosphatase activity    
HMMSmart SM00382 ATPases 4e-18 491-685
IPR011527 ABC transporter, transmembrane domain, type 1
Molecular Function GO:0005524 ATP binding    
Biological Process GO:0006810 transport    
Cellular Component GO:0016021 integral to membrane    
Molecular Function GO:0042626 ATPase activity, coupled to transmembrane movement of substances    
Biological Process GO:0055085 transmembrane transport    
superfamily SSF90123 ABC 7.1e-57 78-434
IPR017871 ABC transporter, conserved site
Molecular Function GO:0005524 ATP binding    
Molecular Function GO:0016887 ATPase activity    
PatternScan PS00211 ABC_TRANSPORTER_1 NA 605-619
IPR017940 ABC transporter, integral membrane type 1
ProfileScan PS50929 ABC_TM1F 36.368 104-387
IPR027417 P-loop containing nucleoside triphosphate hydrolase
superfamily SSF52540 P-loop 1.7e-64 464-688
no_ID  
Gene3D G3DSA:1.20.1560.10 no description 6.5e-58 92-399
Gene3D G3DSA:3.40.50.300 no description 5.7e-81 464-697
HMMPanther PTHR24221 FAMILY 0 64-704
HMMPanther PTHR24221:SF46 PUTATIVE 0 64-704
Seg seg seg NA 12-22
68-84
199-210
597-612
Putative transmembrane regions
  From To
TM segments
SOSUI		 108 130
144 166
235 257
Wolf-PSORT
Lj0g3v0048519.2	chlo 6, plas 5, mito 1, E.R. 1, pero 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj0g3v0048519.2