Miyakogusa Predicted Gene

Lj0g3v0048509.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr0
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL G7L565_MEDTR 714 68.0 82.2 (tr|G7L565) Pentatricopeptide repeat-containing protein OS=Medicago truncatula GN=MTR_7g012890 PE=4 SV=1
TAIR_pep AT1G12300.1 402 38.4 58.6 | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:4184163-4186076 REVERSE LENGTH=637
Medicago Medtr0308s0020.1 723 67.5 82.5 | pentatricopeptide (PPR) repeat protein | LC | scaffold0308:7816-9441 | 20130731
Soybean Glyma09g30530.1 712 67.5 82.6  
LJGI gnl|LJGI|FS341384 761 88.1 88.1 weakly similar to UniRef100_A7Q622 Cluster: Chromosome chr14 scaffold_54, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr14 scaffold_54, whole genome shotgun sequence - Vitis vinifera (Grape), partial (20%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj0g3v0048509.1 length: 540 aa.
IPR002885 Pentatricopeptide repeat
method AccNumber shortName E-value location
HMMPfam PF01535 PPR 0.0018 89-118
404-434
HMMPfam PF12854 PPR_1 8.5e-07 502-534
HMMPfam PF13041 PPR_2 3.7e-17 121-170
191-239
261-309
331-380
436-485
HMMTigr TIGR00756 PPR: 0.0019 89-123
124-157
159-193
194-228
229-263
264-298
299-333
335-367
369-398
404-437
439-472
475-506
509-539
ProfileScan PS51375 PPR 9.964 52-86
87-121
122-156
157-191
192-226
227-261
262-296
297-331
332-366
367-401
402-436
437-471
472-506
507-540
IPR011990 Tetratricopeptide-like helical
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:1.25.40.10 no description 2.2e-06 242-535
no_ID  
HMMPanther PTHR24015 FAMILY 1.9e-175 5-535
HMMPanther PTHR24015:SF0 SUBFAMILY 1.9e-175 5-535
Seg seg seg NA 18-32
superfamily SSF48452 TPR-like 6.4e-06 160-538
Wolf-PSORT
Lj0g3v0048509.1	pero 5, mito 4, extr 2, cyto_mito 2, mito_plas 2
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj0g3v0048509.1