Miyakogusa Predicted Gene

Lj0g3v0047679.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr0
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL G7KGS7_MEDTR 1451 68.4 75.7 (tr|G7KGS7) Pumilio-like protein OS=Medicago truncatula GN=MTR_5g080390 PE=4 SV=1
TAIR_pep AT2G29200.1 920 50.6 62.5 | Symbols: APUM1, PUM1 | pumilio 1 | chr2:12549483-12553185 REVERSE LENGTH=968
Medicago Medtr5g080390.1 1479 72.0 79.7 | pumilio-family RNA-binding repeatprotein | HC | chr5:34410395-34418672 | 20130731
Soybean Glyma11g14500.1 1018 54.9 67.8  
LJGI gnl|LJGI|AV409964 860 100.0 100.0 similar to UniRef100_A7PIR4 Cluster: Chromosome chr13 scaffold_17, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr13 scaffold_17, whole genome shotgun sequence - Vitis vinifera (Grape), partial (25%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj0g3v0047679.1 length: 1030 aa.
IPR001313 Pumilio RNA-binding repeat
method AccNumber shortName E-value location
Molecular Function GO:0003723 RNA binding    
HMMPfam PF00806 PUF 6.4e-07 693-719
731-760
766-797
802-832
838-870
874-904
910-942
959-985
HMMSmart SM00025 Pumilio-like 8.6e-07 692-727
728-763
764-799
800-835
836-872
873-908
909-944
951-986
ProfileScan PS50302 PUM 4.674 692-727
728-763
764-799
800-835
836-872
873-908
909-944
945-986
987-1023
ProfileScan PS50303 PUM_HD 131.577 672-1012
IPR011989 Armadillo-like helical
Gene3D G3DSA:1.25.10.10 no description 1.3e-137 675-1015
IPR012940 Nucleic acid binding NABP
HMMPfam PF07990 NABP 3.1e-100 282-691
IPR016024 Armadillo-type fold
Molecular Function GO:0005488 binding    
superfamily SSF48371 ARM 3.6e-119 672-1010
no_ID  
HMMPanther PTHR12537 RNA 0 14-1020
HMMPanther PTHR12537:SF12 PUMILIO 0 14-1020
Seg seg seg NA 56-70
255-273
Wolf-PSORT
Lj0g3v0047679.1	nucl 10.5, nucl_plas 6, cyto 2
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj0g3v0047679.1