Miyakogusa Predicted Gene

Lj0g3v0046679.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr0
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1K1T0_SOYBN 571 91.8 95.5 (tr|I1K1T0) Uncharacterized protein OS=Glycine max PE=4 SV=2
TAIR_pep AT3G50590.1 506 78.1 91.4 | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr3:18771292-18779220 FORWARD LENGTH=1614
Medicago Medtr8g079820.1 563 90.7 95.5 | transducin/WD40 repeat protein | HC | chr8:34235279-34253775 | 20130731
Soybean Glyma17g20310.1 570 91.8 95.2  
LJGI gnl|LJGI|TC72413 571 99.7 99.7 weakly similar to UniRef100_UPI0000196FB7 Cluster: transducin family protein / WD-40 repeat family protein; n=1; Arabidopsis thaliana|Rep: transducin family protein / WD-40 repeat family protein - Arabidopsis thaliana, partial (6%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj0g3v0046679.1 length: 291 aa.
IPR001680 WD40 repeat
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
HMMPfam PF00400 WD40 0.002 245-273
HMMSmart SM00320 WD40 0.17 50-89
134-183
192-229
234-273
ProfileScan PS50082 WD_REPEATS_2 8.737 248-275
IPR015943 WD40/YVTN repeat-like-containing domain
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:2.130.10.10 no description 1.4e-20 151-273
IPR017986 WD40-repeat-containing domain
Molecular Function GO:0005515 protein binding    
ProfileScan PS50294 WD_REPEATS_REGION 9.573 206-282
superfamily SSF50978 WD40 1.1e-21 20-275
IPR019775 WD40 repeat, conserved site
PatternScan PS00678 WD_REPEATS_1 NA 260-274
no_ID  
HMMPanther PTHR19878 AUTOPHAGY 7.9e-92 1-291
HMMPanther PTHR19878:SF0 SUBFAMILY 7.9e-92 1-291
Wolf-PSORT
Lj0g3v0046679.1	cyto 8, E.R. 3, nucl 1, mito 1, pero 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj0g3v0046679.1