Miyakogusa Predicted Gene

Lj0g3v0042819.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr0
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I3SMC6_LOTJA 571 91.3 91.3 (tr|I3SMC6) Uncharacterized protein OS=Lotus japonicus PE=2 SV=1
TAIR_pep AT5G08080.1 329 61.0 72.9 | Symbols: SYP132, ATSYP132 | syntaxin of plants 132 | chr5:2588532-2591106 FORWARD LENGTH=304
Medicago Medtr2g088700.2 511 81.1 87.9 | syntaxin of plants 122 protein | HC | chr2:37401493-37404700 | 20130731
Soybean Glyma13g38370.1 511 83.1 87.6  
LJGI gnl|LJGI|TC68012 1836 99.9 99.9 similar to UniRef100_A7PXH5 Cluster: Chromosome chr12 scaffold_36, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr12 scaffold_36, whole genome shotgun sequence - Vitis vinifera (Grape), partial (96%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj0g3v0042819.1 length: 310 aa.
IPR000727 Target SNARE coiled-coil domain
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
HMMPfam PF05739 SNARE 4.5e-19 214-276
HMMSmart SM00397 Helical 3.5e-15 204-271
ProfileScan PS50192 T_SNARE 18.061 209-271
IPR006011 Syntaxin, N-terminal
Cellular Component GO:0016020 membrane    
HMMPfam PF00804 Syntaxin 1.8e-17 39-145
HMMSmart SM00503 Syntaxin 3.4e-31 34-160
IPR010989 t-SNARE
Cellular Component GO:0016020 membrane    
Biological Process GO:0016192 vesicle-mediated transport    
superfamily SSF47661 t-snare 2.2e-49 36-264
no_ID  
Coil coil coiled-coil NA 46-77
134-155
Gene3D G3DSA:1.20.58.70 no description 1.6e-51 39-265
HMMPanther PTHR19957 SYNTAXIN 1.3e-138 19-309
HMMPanther PTHR19957:SF26 SYNTAXIN, 1.3e-138 19-309
Seg seg seg NA 158-167
284-298
Putative transmembrane regions
  From To
TM segments
SOSUI		 281 302
Wolf-PSORT
Lj0g3v0042819.1	nucl 8, cyto 2, golg 2, extr 1, vacu 1, golg_plas 1, cyto_pero 1, cyto_E.R. 1, cyto_plas 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj0g3v0042819.1