Miyakogusa Predicted Gene
- Lj0g3v0042119.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr0
- Results of Blast2 searches (The best-hits are tabulated.):
database |
Accession |
Score |
Iden (%) |
Posi (%) |
Definition |
TrEMBL |
K7LCV4_SOYBN |
429 |
66.6 |
80.4 |
(tr|K7LCV4) Uncharacterized protein OS=Glycine max PE=4 SV=1 |
TAIR_pep |
AT4G27290.1 |
261 |
45.3 |
62.4 |
| Symbols: | S-locus lectin protein kinase family protein | chr4:13666281-13669202 FORWARD LENGTH=783 |
Medicago |
Medtr0090s0020.1 |
437 |
63.0 |
74.6 |
| S-locus lectin kinase family protein | HC | scaffold0090:10869-7455 | 20130731 |
Soybean |
Glyma06g40560.1 |
422 |
61.3 |
74.8 |
|
LJGI |
gnl|LJGI|FS320258 |
131 |
88.5 |
88.5 |
weakly similar to UniRef100_Q01963 Cluster: S-locus receptor kinase precursor; n=2; Brassica napus|Rep: S-locus receptor kinase precursor - Brassica napus var. napus, partial (14%) |
- A list of protein families, domains and functional sites (searches in InterPro)
Lj0g3v0042119.1 |
length: 328 aa. |
IPR000742 |
Epidermal growth factor-like domain |
method |
AccNumber |
shortName |
E-value |
location |
Molecular Function |
GO:0005515 |
protein binding |
|
|
ProfileScan |
PS50026 |
EGF_3 |
9.561 |
147-182 |
IPR000858 |
S-locus glycoprotein |
Biological Process |
GO:0048544 |
recognition of pollen |
|
|
HMMPfam |
PF00954 |
S_locus_glycop |
2.4e-28 |
71-180 |
IPR001480 |
Bulb-type lectin domain |
HMMPfam |
PF01453 |
B_lectin |
1.3e-10 |
5-45 |
superfamily |
SSF51110 |
alpha-D-mannose-specific |
1.4e-09 |
2-44 |
IPR003609 |
Apple-like |
HMMSmart |
SM00473 |
divergent |
5.5e-13 |
205-283 |
ProfileScan |
PS50948 |
PAN |
9.651 |
202-284 |
IPR013227 |
PAN-2 domain |
HMMPfam |
PF08276 |
PAN_2 |
1.7e-22 |
202-270 |
no_ID |
|
HMMPanther |
PTHR11795 |
UNCHARACTERIZED |
8.4e-59 |
6-287 |
HMMPanther |
PTHR11795:SF72 |
OS07G0550500 |
8.4e-59 |
6-287 |
Seg |
seg |
seg |
NA |
298-315 |
- Putative transmembrane regions
|
From |
To |
TM segments
SOSUI |
300 |
322 |
- Wolf-PSORT
Lj0g3v0042119.1 cyto 5, nucl 4, chlo 3, golg 2, cysk_nucl 2, nucl_plas 2
- PTS1 (Peroxisome targeting signal type 1)
entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
Lj0g3v0042119.1 |
|