Miyakogusa Predicted Gene

Lj0g3v0040799.1

Related links:

Predicted Sequence Links:

Genome Sequence: Lj3.0_chr0

Full length sequence(192322135 bp) Sequence Cut

Init: Term:
reverse complement

Results of Blast2 searches (The best-hits are tabulated.):

database Accession Score Iden
(%) Posi
(%) Definition

TrEMBL I1LC01_SOYBN 280 72.0 81.3 (tr|I1LC01) Uncharacterized protein OS=Glycine max PE=4 SV=1

TAIR_pep AT4G00026.1 261 65.6 76.4 | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Mitochondrial inner membrane translocase complex, subunit Tim21 (InterPro:IPR013261); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr4:11634-13285 REVERSE LENGTH=269

Medicago Medtr1g077430.1 321 66.1 72.6 | import inner membrane translocase subunit TIM21, putative | HC | chr1:34546589-34542152 | 20130731

Soybean Glyma10g31810.2 280 72.0 81.3

LJGI gnl|LJGI|TC62869 1445 100.0 100.0 similar to UniRef100_A7QQ27 Cluster: Chromosome chr2 scaffold_140, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr2 scaffold_140, whole genome shotgun sequence - Vitis vinifera (Grape), partial (58%)

A list of protein families, domains and functional sites (searches in InterPro)

Lj0g3v0040799.1 length: 241 aa.

IPR013261 Mitochondrial import inner membrane translocase subunit Tim21

method AccNumber shortName E-value location

Cellular Component GO:0005744 mitochondrial inner membrane presequence translocase complex

Biological Process GO:0030150 protein import into mitochondrial matrix

HMMPanther PTHR13032 FAMILY 1.7e-79 43-238

HMMPfam PF08294 TIM21 7.9e-23 97-222

no_ID

HMMPanther PTHR13032:SF6 SUBFAMILY 1.7e-79 43-238

Seg seg seg NA 12-22
29-39
103-119

Putative transmembrane regions

From To

TM segments
SOSUI 102 124

Wolf-PSORT

Lj0g3v0040799.1 chlo 10, mito 3

PTS1 (Peroxisome targeting signal type 1)

entry_id prediction score sppta spptna fp profile

Lj0g3v0040799.1

Top Kazusa DNA Research Institute

database	Accession	Score	Iden (%)	Posi (%)	Definition
TrEMBL	I1LC01_SOYBN	280	72.0	81.3	(tr\|I1LC01) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep	AT4G00026.1	261	65.6	76.4	\| Symbols: \| FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Mitochondrial inner membrane translocase complex, subunit Tim21 (InterPro:IPR013261); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). \| chr4:11634-13285 REVERSE LENGTH=269
Medicago	Medtr1g077430.1	321	66.1	72.6	\| import inner membrane translocase subunit TIM21, putative \| HC \| chr1:34546589-34542152 \| 20130731
Soybean	Glyma10g31810.2	280	72.0	81.3
LJGI	gnl\|LJGI\|TC62869	1445	100.0	100.0	similar to UniRef100_A7QQ27 Cluster: Chromosome chr2 scaffold_140, whole genome shotgun sequence; n=1; Vitis vinifera\|Rep: Chromosome chr2 scaffold_140, whole genome shotgun sequence - Vitis vinifera (Grape), partial (58%)

IPR013261	Mitochondrial import inner membrane translocase subunit Tim21
Lj0g3v0040799.1				length: 241 aa.
method	AccNumber	shortName	E-value	location
Cellular Component	GO:0005744	mitochondrial inner membrane presequence translocase complex
Biological Process	GO:0030150	protein import into mitochondrial matrix
HMMPanther	PTHR13032	FAMILY	1.7e-79	43-238
HMMPfam	PF08294	TIM21	7.9e-23	97-222
no_ID
HMMPanther	PTHR13032:SF6	SUBFAMILY	1.7e-79	43-238
Seg	seg	seg	NA	12-22 29-39 103-119