Miyakogusa Predicted Gene

Lj0g3v0040399.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr0
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL G7KW12_MEDTR 407 81.5 89.9 (tr|G7KW12) Pentatricopeptide repeat-containing protein OS=Medicago truncatula GN=MTR_7g072070 PE=4 SV=1
TAIR_pep AT2G38420.1 211 50.9 72.2 | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr2:16091093-16092454 FORWARD LENGTH=453
Medicago Medtr7g072070.1 407 82.1 90.2 | PPR containing plant-like protein | HC | chr7:26781971-26778389 | 20130731
Soybean Glyma09g41580.1 340 79.5 87.0  
LJGI gnl|LJGI|FS354787 722 99.7 99.7 weakly similar to UniRef100_A7QFI8 Cluster: Chromosome chr8 scaffold_88, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr8 scaffold_88, whole genome shotgun sequence - Vitis vinifera (Grape), partial (15%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj0g3v0040399.1 length: 248 aa.
IPR002885 Pentatricopeptide repeat
method AccNumber shortName E-value location
HMMPfam PF01535 PPR 0.0041 13-41
46-75
152-179
187-214
HMMPfam PF13041 PPR_2 3.1e-18 78-127
HMMTigr TIGR00756 PPR: 0.00029 14-45
46-80
81-115
116-149
151-183
187-219
ProfileScan PS51375 PPR 9.339 9-43
44-78
79-113
114-148
149-183
184-218
no_ID  
HMMPanther PTHR24015 FAMILY 5.1e-60 1-227
Wolf-PSORT
Lj0g3v0040399.1	nucl 10, cyto 2, chlo 1, golg 1, cyto_pero 1, cyto_E.R. 1, cyto_plas 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj0g3v0040399.1