Miyakogusa Predicted Gene

Lj0g3v0039969.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr0
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1L5K0_SOYBN 439 65.8 73.2 (tr|I1L5K0) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep AT3G63460.2 388 57.2 69.8 | Symbols: | transducin family protein / WD-40 repeat family protein | chr3:23431009-23437241 REVERSE LENGTH=1102
Medicago Medtr4g045577.1 427 63.8 72.6 | protein transporter Sec31 | HC | chr4:15341247-15326633 | 20130731
Soybean Glyma09g36050.1 439 65.8 73.2  
LJGI gnl|LJGI|TC66425 396 88.1 88.1 similar to UniRef100_A7Q204 Cluster: Chromosome chr13 scaffold_45, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr13 scaffold_45, whole genome shotgun sequence - Vitis vinifera (Grape), partial (28%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj0g3v0039969.1 length: 425 aa.
IPR001680 WD40 repeat
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
HMMPfam PF00400 WD40 0.0027 104-139
152-181
234-270
HMMSmart SM00320 WD40 0.0004 54-98
99-139
141-181
184-226
230-270
ProfileScan PS50082 WD_REPEATS_2 9.272 106-140
148-190
IPR015943 WD40/YVTN repeat-like-containing domain
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:2.130.10.10 no description 3.5e-41 13-313
IPR017986 WD40-repeat-containing domain
Molecular Function GO:0005515 protein binding    
ProfileScan PS50294 WD_REPEATS_REGION 21.753 106-279
superfamily SSF50978 WD40 7.9e-43 13-325
IPR019775 WD40 repeat, conserved site
PatternScan PS00678 WD_REPEATS_1 NA 126-140
168-182
IPR020472 G-protein beta WD-40 repeat
FPrintScan PR00320 GPROTEINBRPT 5.7e-06 126-140
168-182
213-227
no_ID  
HMMPanther PTHR13923 SEC31-RELATED 3.5e-144 1-314
HMMPanther PTHR13923:SF3 SEC31 3.5e-144 1-314
Seg seg seg NA 333-353
410-425
Wolf-PSORT
Lj0g3v0039969.1	nucl 5, cyto 4, cysk_nucl 4
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj0g3v0039969.1