Miyakogusa Predicted Gene

Lj0g3v0038229.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr0
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL G8A0H7_MEDTR 261 65.8 80.4 (tr|G8A0H7) Pentatricopeptide repeat-containing protein OS=Medicago truncatula GN=MTR_103s0058 PE=4 SV=1
TAIR_pep AT1G12775.1 149 38.4 60.1 | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr1:4353906-4355840 FORWARD LENGTH=644
Medicago Medtr6g079210.1 263 65.8 83.4 | pentatricopeptide (PPR) repeat protein | HC | chr6:29865926-29867095 | 20130731
Soybean Glyma16g27790.1 239 61.8 80.1  
LJGI gnl|LJGI|FS333759 238 89.7 89.7 weakly similar to UniRef100_A7Q622 Cluster: Chromosome chr14 scaffold_54, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr14 scaffold_54, whole genome shotgun sequence - Vitis vinifera (Grape), partial (21%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj0g3v0038229.1 length: 194 aa.
IPR002885 Pentatricopeptide repeat
method AccNumber shortName E-value location
HMMPfam PF12854 PPR_1 9.8e-10 19-49
HMMPfam PF13041 PPR_2 2.4e-18 56-105
120-169
HMMTigr TIGR00756 PPR: 0.00013 24-58
59-93
94-111
123-157
159-180
ProfileScan PS51375 PPR 7.476 22-56
57-91
121-155
92-109
156-190
no_ID  
HMMPanther PTHR24015 FAMILY 1e-56 1-181
HMMPanther PTHR24015:SF0 SUBFAMILY 1e-56 1-181
Wolf-PSORT
Lj0g3v0038229.1	cyto 5.5, cyto_nucl 3.5, chlo 2, plas 2, extr 2, mito 1, vacu 1, golg_plas 1, cysk_plas 1, E.R._plas 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj0g3v0038229.1