Miyakogusa Predicted Gene

Lj0g3v0038179.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr0
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I3S9T5_LOTJA 452 94.3 94.3 (tr|I3S9T5) Uncharacterized protein OS=Lotus japonicus PE=2 SV=1
TAIR_pep AT3G47160.1 304 61.2 76.7 | Symbols: | RING/U-box superfamily protein | chr3:17360238-17361879 REVERSE LENGTH=245
Medicago Medtr3g463720.1 393 78.5 87.6 | RING/U-box protein | HC | chr3:25539281-25542339 | 20130731
Soybean Glyma18g07090.1 392 79.0 86.3  
LJGI gnl|LJGI|TC60693 1417 98.9 98.9 similar to UniRef100_Q9LLM2 Cluster: MTD2; n=1; Medicago truncatula|Rep: MTD2 - Medicago truncatula (Barrel medic), complete
A list of protein families, domains and functional sites (searches in InterPro)
Lj0g3v0038179.1 length: 248 aa.
IPR001841 Zinc finger, RING-type
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
Molecular Function GO:0008270 zinc ion binding    
HMMSmart SM00184 Ring 0.0037 162-199
ProfileScan PS50089 ZF_RING_2 10.940 162-200
IPR013083 Zinc finger, RING/FYVE/PHD-type
Gene3D G3DSA:3.30.40.10 no description 3.5e-10 147-206
IPR017907 Zinc finger, RING-type, conserved site
PatternScan PS00518 ZF_RING_1 NA 177-186
no_ID  
HMMPanther PTHR15067 FAMILY 7.9e-109 1-247
HMMPanther PTHR15067:SF7 ZINC 7.9e-109 1-247
HMMPfam PF13920 zf-C3HC4_3 3.6e-08 159-205
Seg seg seg NA 75-86
superfamily SSF57850 RING/U-box 7.1e-11 157-215
Putative transmembrane regions
  From To
TM segments
SOSUI		 70 91
Wolf-PSORT
Lj0g3v0038179.1	nucl 5, chlo 4, cyto 4
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj0g3v0038179.1