Miyakogusa Predicted Gene
- Lj0g3v0033309.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr0
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
K7KVX1_SOYBN |
414 |
83.8 |
88.9 |
(tr|K7KVX1) Uncharacterized protein OS=Glycine max PE=3 SV=1 |
| TAIR_pep |
AT3G47780.1 |
342 |
71.5 |
81.3 |
| Symbols: ATATH6, ATH6 | ABC2 homolog 6 | chr3:17624500-17628972 FORWARD LENGTH=935 |
| Medicago |
Medtr3g437870.1 |
409 |
83.0 |
89.4 |
| ABC transporter A family protein | HC | chr3:12930672-12922696 | 20130731 |
| Soybean |
Glyma06g20370.1 |
412 |
83.8 |
88.9 |
|
| LJGI |
gnl|LJGI|CB826794 |
381 |
99.0 |
99.0 |
similar to UniRef100_A7QI68 Cluster: Chromosome chr17 scaffold_101, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr17 scaffold_101, whole genome shotgun sequence - Vitis vinifera (Grape), partial (7%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj0g3v0033309.1 |
length: 235 aa. |
| IPR026082 |
ABC transporter A, ABCA |
| method |
AccNumber |
shortName |
E-value |
location |
| HMMPanther |
PTHR19229 |
ATP-BINDING |
5.5e-121 |
1-230 |
| IPR027417 |
P-loop containing nucleoside triphosphate hydrolase |
| superfamily |
SSF52540 |
P-loop |
1.1e-23 |
95-228 |
| no_ID |
|
| Gene3D |
G3DSA:3.40.50.300 |
no description |
1.8e-28 |
96-228 |
| HMMPanther |
PTHR19229:SF7 |
ABC |
5.5e-121 |
1-230 |
- Putative transmembrane regions
| |
From |
To |
TM segments
SOSUI |
11 |
33 |
- Wolf-PSORT
Lj0g3v0033309.1 chlo 7, cyto 2, vacu 2, extr 1, E.R. 1, cysk_nucl 1, cyto_pero 1, cyto_plas 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj0g3v0033309.1 |
|