Miyakogusa Predicted Gene

Lj0g3v0023769.1

Related links:

Predicted Sequence Links:

Genome Sequence: Lj3.0_chr0

Full length sequence(192322135 bp) Sequence Cut

Init: Term:
reverse complement

Results of Blast2 searches (The best-hits are tabulated.):

database Accession Score Iden
(%) Posi
(%) Definition

TrEMBL B9N1Y9_POPTR 323 52.0 66.3 (tr|B9N1Y9) Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_580755 PE=4 SV=1

TAIR_pep AT5G15880.1 297 50.1 63.8 | Symbols: | unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:5185788-5187461 FORWARD LENGTH=348

Medicago Medtr6g016870.1 403 62.3 72.5 | transmembrane protein, putative | HC | chr6:6535959-6541359 | 20130731

Soybean Glyma19g05780.1 367 60.8 68.1

LJGI gnl|LJGI|TC65613 1925 99.3 99.3 similar to UniRef100_A7PAK0 Cluster: Chromosome chr14 scaffold_9, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr14 scaffold_9, whole genome shotgun sequence - Vitis vinifera (Grape), partial (85%)

A list of protein families, domains and functional sites (searches in InterPro)

Lj0g3v0023769.1 length: 374 aa.

no_ID

method AccNumber shortName E-value location

Coil coil coiled-coil NA 97-156
186-224

Seg seg seg NA 13-21
43-62
280-292

Wolf-PSORT

Lj0g3v0023769.1 nucl 11, cyto 2

PTS1 (Peroxisome targeting signal type 1)

entry_id prediction score sppta spptna fp profile

Lj0g3v0023769.1

Top Kazusa DNA Research Institute

database	Accession	Score	Iden (%)	Posi (%)	Definition
TrEMBL	B9N1Y9_POPTR	323	52.0	66.3	(tr\|B9N1Y9) Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_580755 PE=4 SV=1
TAIR_pep	AT5G15880.1	297	50.1	63.8	\| Symbols: \| unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). \| chr5:5185788-5187461 FORWARD LENGTH=348
Medicago	Medtr6g016870.1	403	62.3	72.5	\| transmembrane protein, putative \| HC \| chr6:6535959-6541359 \| 20130731
Soybean	Glyma19g05780.1	367	60.8	68.1
LJGI	gnl\|LJGI\|TC65613	1925	99.3	99.3	similar to UniRef100_A7PAK0 Cluster: Chromosome chr14 scaffold_9, whole genome shotgun sequence; n=1; Vitis vinifera\|Rep: Chromosome chr14 scaffold_9, whole genome shotgun sequence - Vitis vinifera (Grape), partial (85%)

no_ID
Lj0g3v0023769.1				length: 374 aa.
method	AccNumber	shortName	E-value	location
Coil	coil	coiled-coil	NA	97-156 186-224
Seg	seg	seg	NA	13-21 43-62 280-292