Miyakogusa Predicted Gene

Lj0g3v0023469.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr0
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1JH99_SOYBN 800 85.1 92.0 (tr|I1JH99) Uncharacterized protein OS=Glycine max PE=4 SV=2
TAIR_pep AT1G14470.1 437 57.9 77.2 | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr1:4954080-4955702 FORWARD LENGTH=540
Medicago Medtr7g078420.1 749 81.0 87.8 | PPR containing plant-like protein | HC | chr7:29654282-29650656 | 20130731
Soybean Glyma02g38880.1 791 85.2 92.2  
LJGI --No_Hits--        
A list of protein families, domains and functional sites (searches in InterPro)
Lj0g3v0023469.1 length: 459 aa.
IPR002885 Pentatricopeptide repeat
method AccNumber shortName E-value location
HMMPfam PF01535 PPR 0.001 10-39
143-171
247-273
344-368
HMMPfam PF13041 PPR_2 9.8e-11 39-86
172-219
274-321
HMMPfam PF13812 PPR_3 0.34 114-135
HMMTigr TIGR00756 PPR: 0.00031 10-41
41-75
143-172
174-208
247-275
276-309
344-367
ProfileScan PS51375 PPR 7.607 39-73
8-38
74-108
141-175
109-139
176-206
274-308
243-273
340-370
309-339
406-440
IPR011990 Tetratricopeptide-like helical
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:1.25.40.10 no description 9.2e-05 338-425
no_ID  
HMMPanther PTHR24015 FAMILY 1.6e-175 4-454
HMMPanther PTHR24015:SF169PENTATRICOPEPTIDE (PPR) 1.6e-175 4-454
Wolf-PSORT
Lj0g3v0023469.1	chlo 9, cyto 2, nucl 1, mito 1, E.R. 1, cyto_pero 1, cyto_plas 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj0g3v0023469.1