Miyakogusa Predicted Gene

Lj0g3v0021379.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr0
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL G7JN22_MEDTR 549 54.6 65.0 (tr|G7JN22) Alpha-amylase OS=Medicago truncatula GN=MTR_4g015550 PE=4 SV=1
TAIR_pep AT5G01260.2 148 55.2 73.3 | Symbols: | Carbohydrate-binding-like fold | chr5:105367-107045 FORWARD LENGTH=385
Medicago Medtr4g015550.1 549 54.6 65.0 | starch-binding domain protein | HC | chr4:4662810-4667689 | 20130731
Soybean Glyma01g28520.1 497 56.5 67.9  
LJGI gnl|LJGI|TC78796 1322 99.7 99.7 weakly similar to UniRef100_A7PP33 Cluster: Chromosome chr8 scaffold_23, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr8 scaffold_23, whole genome shotgun sequence - Vitis vinifera (Grape), partial (29%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj0g3v0021379.1 length: 545 aa.
IPR002044 Carbohydrate binding module family 20
method AccNumber shortName E-value location
Molecular Function GO:2001070 starch binding    
HMMPfam PF00686 CBM_20 1.1e-18 88-173
HMMSmart SM01065 Starch 7.2e-16 87-177
ProfileScan PS51166 CBM20 18.782 82-184
IPR013783 Immunoglobulin-like fold
Gene3D G3DSA:2.60.40.10 no description 1.1e-24 86-182
IPR013784 Carbohydrate-binding-like fold
Molecular Function GO:0030246 carbohydrate binding    
superfamily SSF49452 Starch-binding 3.8e-27 82-182
IPR015902 Glycoside hydrolase, family 13
Molecular Function GO:0003824 catalytic activity    
HMMPanther PTHR10357 ALPHA-AMYLASE 4.7e-29 80-335
no_ID  
HMMPanther PTHR10357:SF64 GLYCOSIDE 4.7e-29 80-335
Seg seg seg NA 281-287
364-375
Wolf-PSORT
Lj0g3v0021379.1	nucl 8, cyto 3, pero 1, cysk 1, golg 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj0g3v0021379.1