Miyakogusa Predicted Gene
- Lj0g3v0020849.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr0
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
I1M0D7_SOYBN |
125 |
79.3 |
84.1 |
(tr|I1M0D7) Uncharacterized protein OS=Glycine max PE=4 SV=1 |
| TAIR_pep |
AT4G21660.1 |
110 |
69.5 |
80.5 |
| Symbols: | proline-rich spliceosome-associated (PSP) family protein | chr4:11506259-11509772 REVERSE LENGTH=584 |
| Medicago |
Medtr2g013350.1 |
124 |
78.0 |
84.1 |
| splicing factor 3B subunit 2 | HC | chr2:3576901-3585046 | 20130731 |
| Soybean |
Glyma13g25110.1 |
125 |
79.3 |
84.1 |
|
| LJGI |
gnl|LJGI|TC74478 |
561 |
96.4 |
96.4 |
similar to UniRef100_A2Q200 Cluster: PSP, proline-rich; n=1; Medicago truncatula|Rep: PSP, proline-rich - Medicago truncatula (Barrel medic), partial (42%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj0g3v0020849.1 |
length: 113 aa. |
| IPR007180 |
Domain of unknown function DUF382 |
| method |
AccNumber |
shortName |
E-value |
location |
| Cellular Component |
GO:0005634 |
nucleus |
|
|
| HMMPfam |
PF04037 |
DUF382 |
2.5e-12 |
4-38 |
| no_ID |
|
| HMMPanther |
PTHR12785 |
FAMILY |
3.1e-31 |
1-66 |
| HMMPanther |
PTHR12785:SF6 |
SUBFAMILY |
3.1e-31 |
1-66 |
| Seg |
seg |
seg |
NA |
80-91 |
- Wolf-PSORT
Lj0g3v0020849.1 cyto 6.5, cyto_E.R. 4, mito 2, extr 2, chlo 1, nucl 1, cysk 1, cyto_mito 1, cysk_nucl 1, mito_plas 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj0g3v0020849.1 |
|