Miyakogusa Predicted Gene
- Lj0g3v0017329.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr0
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
I3SGX8_LOTJA |
309 |
98.7 |
98.7 |
(tr|I3SGX8) Uncharacterized protein OS=Lotus japonicus PE=2 SV=1 |
| TAIR_pep |
AT2G02230.1 |
164 |
53.0 |
71.8 |
| Symbols: AtPP2-B1, PP2-B1 | phloem protein 2-B1 | chr2:590393-591595 REVERSE LENGTH=336 |
| Medicago |
Medtr1g079370.1 |
249 |
77.3 |
88.0 |
| phloem protein 2-B5 | HC | chr1:35265803-35262751 | 20130731 |
| Soybean |
Glyma10g31260.1 |
240 |
75.8 |
83.2 |
|
| LJGI |
gnl|LJGI|TC67269 |
940 |
99.4 |
99.4 |
weakly similar to UniRef100_A7QZ12 Cluster: Chromosome undetermined scaffold_261, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome undetermined scaffold_261, whole genome shotgun sequence - Vitis vinifera (Grape), partial (47%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj0g3v0017329.1 |
length: 161 aa. |
| IPR001810 |
F-box domain, cyclin-like |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0005515 |
protein binding |
|
|
| HMMPfam |
PF00646 |
F-box |
0.00018 |
2-43 |
| ProfileScan |
PS50181 |
FBOX |
9.180 |
1-43 |
| superfamily |
SSF81383 |
F-box |
1.7e-11 |
3-104 |
| IPR025886 |
Phloem protein 2-like |
| HMMPfam |
PF14299 |
PP2 |
1.4e-28 |
92-151 |
| no_ID |
|
| Gene3D |
G3DSA:1.20.1280.50 |
no description |
1.6e-05 |
2-59 |
| HMMPanther |
PTHR32278 |
FAMILY |
3.1e-79 |
1-151 |
| HMMPanther |
PTHR32278:SF0 |
SUBFAMILY |
3.1e-79 |
1-151 |
- Wolf-PSORT
Lj0g3v0017329.1 cyto 7, nucl 2, chlo 1, plas 1, vacu 1, cysk 1, golg 1, golg_plas 1, cysk_plas 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj0g3v0017329.1 |
|