Miyakogusa Predicted Gene

Lj0g3v0012509.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr0
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL K7LIT2_SOYBN 716 74.6 86.8 (tr|K7LIT2) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep AT4G33260.1 360 44.1 63.5 | Symbols: CDC20.2 | Transducin family protein / WD-40 repeat family protein | chr4:16041233-16043180 REVERSE LENGTH=447
Medicago Medtr2g060710.1 692 71.7 85.4 | transducin/WD40 repeat protein | HC | chr2:25747612-25744900 | 20130731
Soybean Glyma10g22670.1 486 74.0 84.7  
LJGI gnl|LJGI|TC59011 389 87.4 87.4 similar to UniRef100_A7PBM7 Cluster: Chromosome chr16 scaffold_10, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr16 scaffold_10, whole genome shotgun sequence - Vitis vinifera (Grape), partial (15%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj0g3v0012509.1 length: 452 aa.
IPR001680 WD40 repeat
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
HMMPfam PF00400 WD40 0.0013 181-205
210-241
253-288
298-336
393-425
HMMSmart SM00320 WD40 0.003 165-205
208-245
249-288
294-336
339-383
386-425
ProfileScan PS50082 WD_REPEATS_2 12.380 181-214
215-254
256-288
393-426
IPR015943 WD40/YVTN repeat-like-containing domain
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:2.130.10.10 no description 6.3e-55 150-428
IPR017986 WD40-repeat-containing domain
Molecular Function GO:0005515 protein binding    
ProfileScan PS50294 WD_REPEATS_REGION 32.905 173-434
superfamily SSF50978 WD40 3.1e-60 147-425
IPR019775 WD40 repeat, conserved site
PatternScan PS00678 WD_REPEATS_1 NA 192-206
275-289
323-337
412-426
no_ID  
HMMPanther PTHR19918 CELL 7.8e-149 25-452
HMMPanther PTHR19918:SF0 SUBFAMILY 7.8e-149 25-452
Wolf-PSORT
Lj0g3v0012509.1	nucl 7, cyto 4, cysk_nucl 4
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj0g3v0012509.1