Miyakogusa Predicted Gene
- Lj0g3v0012219.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr0
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
I1MYS1_SOYBN |
519 |
70.4 |
80.4 |
(tr|I1MYS1) Uncharacterized protein OS=Glycine max PE=4 SV=1 |
| TAIR_pep |
AT4G39870.2 |
325 |
47.4 |
61.6 |
| Symbols: | TLD-domain containing nucleolar protein | chr4:18502234-18504275 FORWARD LENGTH=394 |
| Medicago |
Medtr3g087230.1 |
462 |
66.5 |
76.6 |
| TLD-domain nucleolar protein | HC | chr3:39550451-39547457 | 20130731 |
| Soybean |
Glyma18g02070.1 |
519 |
70.4 |
80.4 |
|
| LJGI |
gnl|LJGI|TC60232 |
2212 |
100.0 |
100.0 |
similar to UniRef100_A7R5H9 Cluster: Chromosome undetermined scaffold_975, whole genome shotgun sequence; n=2; Vitis vinifera|Rep: Chromosome undetermined scaffold_975, whole genome shotgun sequence - Vitis vinifera (Grape), partial (60%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj0g3v0012219.1 |
length: 371 aa. |
| IPR006571 |
TLDc |
| method |
AccNumber |
shortName |
E-value |
location |
| HMMPfam |
PF07534 |
TLD |
5.6e-30 |
211-348 |
| HMMSmart |
SM00584 |
domain |
2.4e-31 |
185-349 |
| no_ID |
|
| HMMPanther |
PTHR23354 |
NUCLEOLAR |
4.1e-116 |
145-351 |
| HMMPanther |
PTHR23354:SF5 |
NUCLEOLAR |
4.1e-116 |
145-351 |
| Seg |
seg |
seg |
NA |
30-40 |
- Wolf-PSORT
Lj0g3v0012219.1 nucl 5.5, cyto_nucl 4.5, chlo 3, cyto 2.5, mito 1, plas 1, cysk 1, cysk_plas 1, mito_plas 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj0g3v0012219.1 |
|