Miyakogusa Predicted Gene

Lj0g3v0008999.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr0
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL H8WVC7_LOTJA 596 100.0 100.0 (tr|H8WVC7) E3 ubiquitin ligase-like protein (Fragment) OS=Lotus japonicus GN=SINA5 PE=2 SV=1
TAIR_pep AT3G58040.1 470 77.1 87.7 | Symbols: SINAT2 | seven in absentia of Arabidopsis 2 | chr3:21489612-21491085 FORWARD LENGTH=308
Medicago Medtr1g054335.1 483 80.3 88.4 | ubiquitin ligase SINAT3 | HC | chr1:23400280-23404620 | 20130731
Soybean Glyma19g33170.2 483 78.5 87.3  
LJGI gnl|LJGI|TC62546 541 83.9 83.9 similar to UniRef100_Q9XGC3 Cluster: SINA2p; n=1; Vitis vinifera|Rep: SINA2p - Vitis vinifera (Grape), partial (89%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj0g3v0008999.1 length: 285 aa.
IPR001841 Zinc finger, RING-type
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
Molecular Function GO:0008270 zinc ion binding    
ProfileScan PS50089 ZF_RING_2 0.0 37-72
IPR004162 Seven-in-absentia protein, sina
Cellular Component GO:0005634 nucleus    
Biological Process GO:0006511 ubiquitin-dependent protein catabolic process    
Biological Process GO:0007275 multicellular organismal development    
HMMPanther PTHR10315 PTHR10315 1.5999883531364447E-98 24-285
IPR008974 TRAF-like
Molecular Function GO:0005515 protein binding    
superfamily SSF49599 Traf_like 3.4999946686394885E-42 90-282
IPR013010 Zinc finger, SIAH-type
Molecular Function GO:0008270 zinc ion binding    
ProfileScan PS51081 ZF_SIAH 0.0 90-150
IPR013083 Zinc finger, RING/FYVE/PHD-type
Gene3D G3DSA:3.30.40.10G3DSA:3.30.40.10 T[27-102] 1.0E-7  
IPR013323 SIAH-type domain
Molecular Function GO:0004842 ubiquitin-protein ligase activity    
Molecular Function GO:0008270 zinc ion binding    
Biological Process GO:0016567 protein ubiquitination    
Gene3D G3DSA:3.90.890.10G3DSA:3.90.890.10 T[103-145] 5.89999999942746E-20  
IPR018121 Seven-in-absentia protein, TRAF-like domain
Cellular Component GO:0005634 nucleus    
Biological Process GO:0006511 ubiquitin-dependent protein catabolic process    
Biological Process GO:0007275 multicellular organismal development    
HMMPfam PF03145 Sina 5.900000000000079E-67 79-278
no_ID  
Gene3D G3DSA:2.60.210.10G3DSA:2.60.210.10 T[155-282] 3.099999999755361E-48  
HMMPanther PTHR10315:SF3 PTHR10315:SF3 1.5999883531364447E-98 24-285
Wolf-PSORT
Lj0g3v0008999.1	cyto 6, nucl 3, cyto_pero 3, cyto_E.R. 3
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj0g3v0008999.1