Miyakogusa Predicted Gene
- Lj0g3v0008379.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr0
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
K7N1P3_SOYBN |
416 |
48.8 |
62.0 |
(tr|K7N1P3) Uncharacterized protein OS=Glycine max PE=4 SV=1 |
| TAIR_pep |
AT4G31980.1 |
206 |
32.6 |
51.6 |
| Symbols: | unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF247, plant (InterPro:IPR004158), Protein of unknown function DUF862, eukaryotic (InterPro:IPR008580); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF247) (TAIR:AT5G11290.1); Has 1967 Blast hits to 1844 proteins in 183 species: Archae - 0; Bacteria - 6; Metazoa - 223; Fungi - 83; Plants - 1477; Viruses - 0; Other Eukaryotes - 178 (source: NCBI BLink). | chr4:15464905-15469204 FORWARD LENGTH=680 |
| Medicago |
Medtr3g079390.1 |
401 |
47.0 |
62.9 |
| DUF247 domain protein | HC | chr3:35694606-35692967 | 20130731 |
| Soybean |
Glyma16g27690.1 |
398 |
50.2 |
64.6 |
|
| LJGI |
--No_Hits--
|
|
|
|
|
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj0g3v0008379.1 |
length: 438 aa. |
| IPR004158 |
Protein of unknown function DUF247, plant |
| method |
AccNumber |
shortName |
E-value |
location |
| HMMPfam |
PF03140 |
DUF247 |
4.7e-105 |
42-424 |
| no_ID |
|
| HMMPanther |
PTHR31549 |
FAMILY |
1.5e-97 |
2-438 |
| Seg |
seg |
seg |
NA |
411-426 |
- Putative transmembrane regions
| |
From |
To |
TM segments
SOSUI |
411 |
433 |
- Wolf-PSORT
Lj0g3v0008379.1 cyto 4, plas 2, vacu 2, E.R. 2, golg 2, golg_plas 2, E.R._vacu 2, cyto_pero 2, E.R._plas 2
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj0g3v0008379.1 |
|