Miyakogusa Predicted Gene

Lj0g3v0006359.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr0
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL G8A009_MEDTR 867 79.5 88.3 (tr|G8A009) Ankyrin repeat-containing protein OS=Medicago truncatula GN=MTR_097s0002 PE=4 SV=1
TAIR_pep AT2G01680.1 686 64.4 78.1 | Symbols: | Ankyrin repeat family protein | chr2:306597-308427 FORWARD LENGTH=532
Medicago Medtr1g032100.1 867 79.5 88.3 | ankyrin repeat plant-like protein | HC | chr1:11357488-11361161 | 20130731
Soybean Glyma02g09330.1 825 75.7 85.4  
LJGI gnl|LJGI|FS330238 492 82.6 82.6 similar to UniRef100_A7P3U7 Cluster: Chromosome chr1 scaffold_5, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr1 scaffold_5, whole genome shotgun sequence - Vitis vinifera (Grape), partial (53%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj0g3v0006359.1 length: 534 aa.
IPR002110 Ankyrin repeat
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
HMMPfam PF00023 Ank 9.1e-05 231-263
HMMSmart SM00248 ankyrin 0.01 59-87
94-123
128-158
162-191
196-226
230-260
ProfileScan PS50088 ANK_REPEAT 8.523 162-189
230-252
IPR020683 Ankyrin repeat-containing domain
Gene3D G3DSA:1.25.40.20 no description 8.3e-26 15-102
103-173
174-294
HMMPfam PF12796 Ank_2 9.6e-14 133-221
ProfileScan PS50297 ANK_REP_REGION 32.227 59-293
superfamily SSF48403 Ankyrin 1e-49 17-295
IPR026961 PGG domain
HMMPfam PF13962 PGG 2.7e-21 346-455
IPR027001 Caskin/Ankyrin repeat-containing protein
HMMPanther PTHR24177 FAMILY 9.4e-262 9-522
IPR027002 Ankyrin repeat-containing protein
HMMPanther PTHR24177:SF1 SUBFAMILY 9.4e-262 9-522
no_ID  
Seg seg seg NA 40-55
Putative transmembrane regions
  From To
TM segments
SOSUI		 351 373
395 417
433 455
466 488
Wolf-PSORT
Lj0g3v0006359.1	plas 9, vacu 3, cyto 1, E.R. 1, cyto_E.R. 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj0g3v0006359.1