Miyakogusa Predicted Gene

Lj0g3v0004669.2

Related links:

Predicted Sequence Links:

Genome Sequence: Lj3.0_chr0

Full length sequence(192322135 bp) Sequence Cut

Init: Term:
reverse complement

Results of Blast2 searches (The best-hits are tabulated.):

database Accession Score Iden
(%) Posi
(%) Definition

TrEMBL I1MS71_SOYBN 1222 81.9 89.3 (tr|I1MS71) Uncharacterized protein OS=Glycine max PE=4 SV=2

TAIR_pep AT5G22750.1 972 64.1 77.1 | Symbols: RAD5 | DNA/RNA helicase protein | chr5:7565374-7570871 REVERSE LENGTH=1029

Medicago Medtr2g084630.2 1230 81.4 88.8 | DNA/RNA helicase | HC | chr2:35865773-35875405 | 20130731

Soybean Glyma17g05390.1 1216 81.3 88.6

LJGI gnl|LJGI|BP042870 967 100.0 100.0 similar to UniRef100_A7PQK2 Cluster: Chromosome chr6 scaffold_25, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr6 scaffold_25, whole genome shotgun sequence - Vitis vinifera (Grape), partial (12%)

A list of protein families, domains and functional sites (searches in InterPro)

Lj0g3v0004669.2 length: 720 aa.

IPR000330 SNF2-related

method AccNumber shortName E-value location

Molecular Function GO:0003677 DNA binding

Molecular Function GO:0005524 ATP binding

HMMPfam PF00176 SNF2_N 6e-82 327-716

IPR014001 Helicase, superfamily 1/2, ATP-binding domain

HMMSmart SM00487 DEAD-like 1.1e-27 320-621

ProfileScan PS51192 HELICASE_ATP_BIND_1 18.343 382-599

IPR014905 HIP116, Rad5p N-terminal

Molecular Function GO:0003676 nucleic acid binding

Molecular Function GO:0008270 zinc ion binding

Molecular Function GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides

HMMPfam PF08797 HIRAN 7.7e-17 102-208

HMMSmart SM00910 no description 1.1e-15 101-210

IPR027417 P-loop containing nucleoside triphosphate hydrolase

superfamily SSF52540 P-loop 6e-14 313-637
645-718

no_ID

Gene3D G3DSA:3.40.50.300 no description 2e-24 463-596

HMMPanther PTHR10799 SWI/SNF-RELATED 5.2e-244 5-720

HMMPanther PTHR10799:SF247SUBFAMILY NOT 5.2e-244 5-720

Wolf-PSORT

Lj0g3v0004669.2 chlo 6, cysk 3, cyto 2, cysk_nucl 2, cysk_plas 2

PTS1 (Peroxisome targeting signal type 1)

entry_id prediction score sppta spptna fp profile

Lj0g3v0004669.2

Top Kazusa DNA Research Institute

database	Accession	Score	Iden (%)	Posi (%)	Definition
TrEMBL	I1MS71_SOYBN	1222	81.9	89.3	(tr\|I1MS71) Uncharacterized protein OS=Glycine max PE=4 SV=2
TAIR_pep	AT5G22750.1	972	64.1	77.1	\| Symbols: RAD5 \| DNA/RNA helicase protein \| chr5:7565374-7570871 REVERSE LENGTH=1029
Medicago	Medtr2g084630.2	1230	81.4	88.8	\| DNA/RNA helicase \| HC \| chr2:35865773-35875405 \| 20130731
Soybean	Glyma17g05390.1	1216	81.3	88.6
LJGI	gnl\|LJGI\|BP042870	967	100.0	100.0	similar to UniRef100_A7PQK2 Cluster: Chromosome chr6 scaffold_25, whole genome shotgun sequence; n=1; Vitis vinifera\|Rep: Chromosome chr6 scaffold_25, whole genome shotgun sequence - Vitis vinifera (Grape), partial (12%)

IPR000330	SNF2-related
Lj0g3v0004669.2				length: 720 aa.
method	AccNumber	shortName	E-value	location
Molecular Function	GO:0003677	DNA binding
Molecular Function	GO:0005524	ATP binding
HMMPfam	PF00176	SNF2_N	6e-82	327-716
IPR014001	Helicase, superfamily 1/2, ATP-binding domain
HMMSmart	SM00487	DEAD-like	1.1e-27	320-621
ProfileScan	PS51192	HELICASE_ATP_BIND_1	18.343	382-599
IPR014905	HIP116, Rad5p N-terminal
Molecular Function	GO:0003676	nucleic acid binding
Molecular Function	GO:0008270	zinc ion binding
Molecular Function	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
HMMPfam	PF08797	HIRAN	7.7e-17	102-208
HMMSmart	SM00910	no description	1.1e-15	101-210
IPR027417	P-loop containing nucleoside triphosphate hydrolase
superfamily	SSF52540	P-loop	6e-14	313-637 645-718
no_ID
Gene3D	G3DSA:3.40.50.300	no description	2e-24	463-596
HMMPanther	PTHR10799	SWI/SNF-RELATED	5.2e-244	5-720
HMMPanther	PTHR10799:SF247SUBFAMILY	NOT	5.2e-244	5-720