Miyakogusa Predicted Gene

Lj0g3v0004669.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr0
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1MS71_SOYBN 1138 80.9 88.7 (tr|I1MS71) Uncharacterized protein OS=Glycine max PE=4 SV=2
TAIR_pep AT5G22750.1 890 62.2 75.8 | Symbols: RAD5 | DNA/RNA helicase protein | chr5:7565374-7570871 REVERSE LENGTH=1029
Medicago Medtr2g084630.2 1145 80.4 88.2 | DNA/RNA helicase | HC | chr2:35865773-35875405 | 20130731
Soybean Glyma17g05390.1 1132 80.2 87.9  
LJGI gnl|LJGI|BP042870 967 100.0 100.0 similar to UniRef100_A7PQK2 Cluster: Chromosome chr6 scaffold_25, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr6 scaffold_25, whole genome shotgun sequence - Vitis vinifera (Grape), partial (12%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj0g3v0004669.1 length: 685 aa.
IPR000330 SNF2-related
method AccNumber shortName E-value location
Molecular Function GO:0003677 DNA binding    
Molecular Function GO:0005524 ATP binding    
HMMPfam PF00176 SNF2_N 5.7e-74 327-680
IPR014001 Helicase, superfamily 1/2, ATP-binding domain
HMMSmart SM00487 DEAD-like 1.1e-27 320-621
ProfileScan PS51192 HELICASE_ATP_BIND_1 18.343 382-599
IPR014905 HIP116, Rad5p N-terminal
Molecular Function GO:0003676 nucleic acid binding    
Molecular Function GO:0008270 zinc ion binding    
Molecular Function GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides    
HMMPfam PF08797 HIRAN 7.1e-17 102-208
HMMSmart SM00910 no description 1.1e-15 101-210
IPR027417 P-loop containing nucleoside triphosphate hydrolase
superfamily SSF52540 P-loop 2.4e-68 313-637
no_ID  
Gene3D G3DSA:3.40.50.300 no description 1.8e-24 463-596
HMMPanther PTHR10799 SWI/SNF-RELATED 5e-206 5-681
HMMPanther PTHR10799:SF247SUBFAMILY NOT 5e-206 5-681
Wolf-PSORT
Lj0g3v0004669.1	chlo 6, nucl 2, cyto 2, cysk 2, cyto_nucl 2, cysk_nucl 2
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj0g3v0004669.1 Not targeted -45.559 -1.983 -14.384 65.73% -29.192