Miyakogusa Predicted Gene

Lj0g3v0004639.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr0
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1LTR2_SOYBN 362 91.4 92.0 (tr|I1LTR2) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep AT5G42820.1 313 78.0 88.2 | Symbols: ATU2AF35B, U2AF35B | Zinc finger C-x8-C-x5-C-x3-H type family protein | chr5:17170445-17171296 REVERSE LENGTH=283
Medicago Medtr2g084715.2 368 92.5 93.6 | splicing factor U2af small subunit A-like protein | HC | chr2:35927010-35930737 | 20130731
Soybean Glyma12g30590.2 362 91.4 92.0  
LJGI gnl|LJGI|TC82561 1027 99.6 99.6 similar to UniRef100_Q99L29 Cluster: cDNA sequence BC003883; n=1; Mus musculus|Rep: cDNA sequence BC003883 - Mus musculus (Mouse), partial (30%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj0g3v0004639.1 length: 318 aa.
IPR000504 RNA recognition motif domain
method AccNumber shortName E-value location
Molecular Function GO:0003676 nucleic acid binding    
HMMSmart SM00360 RNA 0.0047 45-142
ProfileScan PS50102 RRM 11.264 44-146
IPR000571 Zinc finger, CCCH-type
Molecular Function GO:0003676 nucleic acid binding    
Molecular Function GO:0008270 zinc ion binding    
HMMPfam PF00642 zf-CCCH 0.00021 14-37
150-173
HMMSmart SM00356 zinc 0.13 13-39
148-174
ProfileScan PS50103 ZF_C3H1 11.122 12-40
148-175
IPR003954 RNA recognition motif domain, eukaryote
Molecular Function GO:0003676 nucleic acid binding    
HMMSmart SM00361 RNA 6.4e-05 61-142
IPR009145 U2 auxiliary factor small subunit
Molecular Function GO:0003723 RNA binding    
Cellular Component GO:0005634 nucleus    
FPrintScan PR01848 U2AUXFACTOR 2.1e-62 18-37
37-57
75-90
103-125
130-154
165-177
HMMPanther PTHR12620 U2 7.2e-139 1-298
IPR012677 Nucleotide-binding, alpha-beta plait
Molecular Function GO:0000166 nucleotide binding    
Gene3D G3DSA:3.30.70.330 no description 4.4e-24 44-145
no_ID  
HMMPfam PF13893 RRM_5 7.9e-07 85-144
Seg seg seg NA 78-89
188-216
218-256
305-316
superfamily SSF54928 RNA-binding 1.9e-19 30-155
superfamily SSF90229 CCCH 0.006 146-174
10-39
Wolf-PSORT
Lj0g3v0004639.1	nucl 14
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj0g3v0004639.1