Miyakogusa Predicted Gene
- Lj0g3v0002119.3
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr0
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
B9MYV9_POPTR |
132 |
60.2 |
68.1 |
(tr|B9MYV9) Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_679913 PE=4 SV=1 |
| TAIR_pep |
AT3G11490.1 |
85.5 |
72.7 |
81.8 |
| Symbols: | rac GTPase activating protein | chr3:3617523-3619567 REVERSE LENGTH=435 |
| Medicago |
Medtr2g086580.1 |
92.0 |
78.2 |
83.6 |
| PAK-box/P21-Rho-binding domain Rho GTPase activating protein | HC | chr2:36405412-36408662 | 20130731 |
| Soybean |
Glyma10g08610.1 |
114 |
50.4 |
55.7 |
|
| LJGI |
gnl|LJGI|TC69514 |
888 |
98.9 |
98.9 |
similar to UniRef100_Q0PKR6 Cluster: RhoGAP1; n=1; Nicotiana tabacum|Rep: RhoGAP1 - Nicotiana tabacum (Common tobacco), partial (16%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj0g3v0002119.3 |
length: 155 aa. |
| IPR000198 |
Rho GTPase-activating protein domain |
| method |
AccNumber |
shortName |
E-value |
location |
| Cellular Component |
GO:0005622 |
intracellular |
|
|
| Biological Process |
GO:0007165 |
signal transduction |
|
|
| Gene3D |
G3DSA:1.10.555.10 |
no description |
0.0004 |
33-86 |
| IPR008936 |
Rho GTPase activation protein |
| Cellular Component |
GO:0005622 |
intracellular |
|
|
| Biological Process |
GO:0007165 |
signal transduction |
|
|
| superfamily |
SSF48350 |
GTPase |
2.3e-06 |
29-117 |
| no_ID |
|
| HMMPanther |
PTHR23177 |
MKIAA1688 |
1.2e-29 |
32-117 |
| HMMPanther |
PTHR23177:SF2 |
GTPASE |
1.2e-29 |
32-117 |
- Putative transmembrane regions
| |
From |
To |
TM segments
SOSUI |
132 |
154 |
- Wolf-PSORT
Lj0g3v0002119.3 chlo 4, E.R. 3, cyto 2, vacu 2, mito 1, pero 1, golg 1, cyto_nucl 1, cyto_plas 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj0g3v0002119.3 |
|