Miyakogusa Predicted Gene
- Lj6g3v2193420.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj6g3v2193420.1 tr|D7KHT7|D7KHT7_ARALL KH domain-containing
protein OS=Arabidopsis lyrata subsp. lyrata
GN=ARALYDRAF,32.09,3e-18,KH_1,K Homology domain, type 1; Eukaryotic
type KH-domain (KH-domain type I),NULL; KH_TYPE_1,K Homol,CUFF.60864.1
(699 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr2g009650.1 | RNA-binding KH domain protein | HC | chr2:2001... 699 0.0
Medtr4g093650.1 | RNA-binding KH domain protein | HC | chr4:3709... 498 e-141
Medtr5g031720.1 | RNA-binding KH domain protein | HC | chr5:1360... 244 3e-64
Medtr4g008080.1 | RNA-binding KH domain protein | HC | chr4:1379... 211 2e-54
Medtr7g011080.2 | RNA-binding KH domain protein | HC | chr7:2893... 191 3e-48
Medtr7g011080.1 | RNA-binding KH domain protein | HC | chr7:2893... 191 3e-48
Medtr6g012630.1 | RNA-binding KH domain protein | HC | chr6:3864... 189 9e-48
Medtr6g012630.5 | RNA-binding KH domain protein | HC | chr6:3864... 189 9e-48
Medtr6g012630.2 | RNA-binding KH domain protein | HC | chr6:3864... 189 9e-48
Medtr6g012630.4 | RNA-binding KH domain protein | HC | chr6:3864... 188 1e-47
Medtr3g091800.1 | RNA-binding KH domain protein | HC | chr3:4179... 177 3e-44
Medtr3g110650.2 | RNA-binding KH domain protein | HC | chr3:5171... 171 3e-42
Medtr3g110650.1 | RNA-binding KH domain protein | HC | chr3:5171... 171 3e-42
Medtr6g012630.3 | RNA-binding KH domain protein | HC | chr6:3864... 168 2e-41
Medtr2g019090.2 | RNA-binding KH domain protein | HC | chr2:6163... 147 5e-35
Medtr2g019090.1 | RNA-binding KH domain protein | HC | chr2:6163... 140 3e-33
Medtr7g006750.1 | pectinacetylesterase family protein | LC | chr... 115 2e-25
Medtr2g038020.1 | poly(rC)-binding-like protein | HC | chr2:1650... 96 1e-19
Medtr4g127380.1 | poly(rC)-binding-like protein | HC | chr4:5286... 96 1e-19
Medtr7g115340.1 | poly(rC)-binding-like protein | HC | chr7:4764... 83 8e-16
Medtr1g070380.1 | poly(rC)-binding-like protein | HC | chr1:3114... 83 9e-16
Medtr1g070380.3 | poly(rC)-binding-like protein | HC | chr1:3114... 82 1e-15
Medtr1g070380.2 | poly(rC)-binding-like protein | HC | chr1:3114... 82 1e-15
Medtr7g115340.2 | poly(rC)-binding-like protein | HC | chr7:4764... 81 3e-15
Medtr7g080630.3 | poly(rC)-binding-like protein | HC | chr7:3070... 77 8e-14
Medtr7g080630.5 | poly(rC)-binding-like protein | HC | chr7:3070... 77 8e-14
Medtr7g080630.4 | poly(rC)-binding-like protein | HC | chr7:3070... 75 3e-13
Medtr7g080630.1 | poly(rC)-binding-like protein | HC | chr7:3070... 75 3e-13
Medtr7g080630.2 | poly(rC)-binding-like protein | HC | chr7:3070... 75 3e-13
Medtr7g082290.1 | KH domain protein | HC | chr7:31538792-3153788... 67 5e-11
Medtr1g016760.1 | RNA-binding KH domain protein | HC | chr1:4457... 63 9e-10
Medtr3g104280.1 | RNA-binding KH domain protein | HC | chr3:4804... 54 6e-07
Medtr3g104270.1 | RNA-binding KH domain protein | HC | chr3:4803... 53 1e-06
Medtr5g049770.1 | RNA-binding KH domain protein | HC | chr5:2176... 51 4e-06
>Medtr2g009650.1 | RNA-binding KH domain protein | HC |
chr2:2001720-2009761 | 20130731
Length = 766
Score = 699 bits (1805), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 398/654 (60%), Positives = 447/654 (68%), Gaps = 63/654 (9%)
Query: 1 MGSSFFSPPAKRSMLGISDPDPYSPNGSSKRARSSNHPPS-IPTPSGHVAFRILCHSSRI 59
MGS+F SPPAKRS+ G+ DP+P+ PNGSSKRA+ S P +P P+GHVAFR+LC+SSRI
Sbjct: 1 MGSNFLSPPAKRSITGLPDPNPF-PNGSSKRAKPSKPPQQPLPIPAGHVAFRLLCNSSRI 59
Query: 60 GGVIGKSGAVIKNLQQSTGAKIRVEDAPAESPDRVIMVIADAALTG----RCHIG-GEEI 114
GGVIGKSG VIKNLQ +TGAKIR+ED+P ESPDRVIMVI + + G R H G GE I
Sbjct: 60 GGVIGKSGTVIKNLQLTTGAKIRIEDSPNESPDRVIMVIGASNIDGKVMVRSHSGDGEAI 119
Query: 115 EFSKAQEALVKVFDRILEVAEEMGGIEIGDRAVSCRLVADAAQAGSVIGKGGTVVEKIKK 174
E SKAQEAL++VFDRILEVA EM GIE+GDR VSCRLVAD+AQAGSVIGKGG VVEKIKK
Sbjct: 120 EVSKAQEALLRVFDRILEVAAEMEGIELGDRTVSCRLVADSAQAGSVIGKGGKVVEKIKK 179
Query: 175 DTGCKIRVSGDNMPACTSSSDEVIEIEGSVSSVKKALIAVSRRLQDCSAADRIKMVGSKP 234
DTGCKI V DN+PAC SS DEVIEIEGSVSSVKKAL+AVSR LQD ADR KM G
Sbjct: 180 DTGCKIWVCKDNLPACISSPDEVIEIEGSVSSVKKALVAVSRNLQDRHHADRTKMTGQNS 239
Query: 235 YEVFQHE------------------------TLPAVPRETFTDRHMDHHLQRXXXXX--- 267
+EV HE TL AVP ET TD H+DH LQR
Sbjct: 240 HEVIHHEALVGVPRETLMSVPRETFIGAPRETLTAVPCETLTDLHVDHLLQRRSALSILP 299
Query: 268 XXXXXXXXGVHSLPAEVNRVSPRESKALQQEVTFKIICSNDRXXXXXXXXXXXXRALQSE 327
GVHSL AEVNRVS E KA QQE+TFKIICSNDR RALQSE
Sbjct: 300 SSSNSYATGVHSLSAEVNRVSSLEPKAHQQEITFKIICSNDRIGGVIGKGGNIIRALQSE 359
Query: 328 TGATISIGPAVADCDDRLISITASENPESRYSPAQKAVVLVFSRSVEAAIEKGIDSGLNK 387
TGAT+S+GP+VA+C+DRLI+ITASE+PESRYSPAQKA VLVFSRSVEA IEKGIDSGLN
Sbjct: 360 TGATVSVGPSVAECEDRLITITASESPESRYSPAQKATVLVFSRSVEAGIEKGIDSGLNT 419
Query: 388 GSSVTARLVVPSNQVGCLLGKGGVIVSEMRRATGASIRIIGADQVPKCASDNDQVVQISG 447
GSSVTA+LVV SNQVGCLLGKGGVIVSEMR+ATGASIRI+G D+V KCASDNDQVVQISG
Sbjct: 420 GSSVTAQLVVSSNQVGCLLGKGGVIVSEMRKATGASIRIVGTDKVSKCASDNDQVVQISG 479
Query: 448 EFSNVQDALYNATGRLRDNLLGSTQGSAATRSLSSVRADTSPYEKLRDXXXXXXXXXXXX 507
EFSNVQDALYNATGRLRDNL G T SA TRSLSSV++DTSPY +LRD
Sbjct: 480 EFSNVQDALYNATGRLRDNLFGGTLKSAGTRSLSSVQSDTSPYGRLRDVPLGSQSSLRAD 539
Query: 508 SHGLSR---------HTFPQDIDHVALTRNLDRPSHTFPQEIDHLALTRNLDRP------ 552
++ R + D R++ + Q D R D P
Sbjct: 540 TNAFVRLRDVPLVGQSSLQADTSPYVRLRDVSLGGQSSLQS-DTSPYGRLRDIPLGGQSS 598
Query: 553 -SSRTFP----QDI-----DHLALSRNLDRPSSHTFPQDIDHLAFTRNLDRPPS 596
S T P +DI + +S +L R HTF Q IDH + RN DRP S
Sbjct: 599 LQSDTSPYGKLRDIPLGGQSAVGISHSLSR---HTFSQGIDHFSLGRNYDRPSS 649
>Medtr4g093650.1 | RNA-binding KH domain protein | HC |
chr4:37099130-37092340 | 20130731
Length = 616
Score = 498 bits (1282), Expect = e-141, Method: Compositional matrix adjust.
Identities = 275/494 (55%), Positives = 333/494 (67%), Gaps = 27/494 (5%)
Query: 45 SGHVAFRILCHSSRIGGVIGKSGAVIKNLQQSTGAKIRVEDAPAESPDRVIMVIADAALT 104
+GHV FR+LCH+SRIG IGKSG+VIK+LQQ TGA+IR++DAP + P+RVI+VI +
Sbjct: 17 NGHVVFRLLCHASRIGAFIGKSGSVIKSLQQLTGARIRIDDAPVDCPERVIVVIVNLNGD 76
Query: 105 GRCHIGGEEIEFSKAQEALVKVFDRILEVAE-EMGGIEIGDRAVSCRLVADAAQAGSVIG 163
G + QEAL+KVF+RIL+VA E G +GDR VSCRL+ +A QAG VIG
Sbjct: 77 GDVSL--------NPQEALLKVFERILDVAAAESDGNGVGDRVVSCRLLVNAGQAGGVIG 128
Query: 164 KGGTVVEKIKKDTGCKIRVSGDNMPACTSSSDEVIEIEGSVSSVKKALIAVSRRLQDCSA 223
KGG VV KI+ DTGC+IRV D +PACT SDE+IEI+G SSVKKAL+AV+ RLQDC
Sbjct: 129 KGGMVVAKIRADTGCRIRVLNDKLPACTKPSDEIIEIQGIASSVKKALVAVAGRLQDCPP 188
Query: 224 ADRIKMVGSKPYEVFQHETLPAVPRETFTDRHMDHHLQRXXXXXXXXXXXXXGV----HS 279
DR KM+G++PYE FQ+ET AVP E TD +MD LQR GV H
Sbjct: 189 LDRTKMMGTRPYEAFQNET-SAVPHEGLTDLNMDFRLQRSSAISTSSIRSN-GVPSKSHP 246
Query: 280 LPAEVNRVSPRESKALQQEVTFKIICSNDRXXXXXXXXXXXXRALQSETGATISIGPAVA 339
L E NRVS + +AL+QEVTF+I+CS DR +ALQ+ETGA IS+GP V
Sbjct: 247 LSVEDNRVSSLDPEALKQEVTFRILCSGDRIGAVLGKGGSIVKALQNETGANISVGPPVV 306
Query: 340 DCDDRLISITASENPESRYSPAQKAVVLVFSRSVEAAIEKGIDSGLNKGSSVTARLVVPS 399
+C+DRLI+ITA ENPESR+SPAQ+AVVLVF RS+E IEK +D NK SSVTA+LVVPS
Sbjct: 307 ECEDRLITITALENPESRFSPAQEAVVLVFCRSIECCIEKVVDWRSNKESSVTAQLVVPS 366
Query: 400 NQVGCLLGKGGVIVSEMRRATGASIRIIGADQVPKCASDNDQVVQISGEFSNVQDALYNA 459
NQVG LLGKGG IVSEMR+AT SIRI +VPKCAS NDQVVQISGE NV+DALYNA
Sbjct: 367 NQVGVLLGKGGAIVSEMRKATWTSIRITRNGEVPKCASFNDQVVQISGELPNVRDALYNA 426
Query: 460 TGRLRDNLLGSTQGSAATRSLSSVRADTSPYEKLRDX--XXXXXXXXXXXSHGLSRHTFP 517
T RLRD++ Q S T PY + RD +HG S H+
Sbjct: 427 TRRLRDHIFLIAQNSGG----------TGPYRRPRDSIPLGLGGQSVVGSNHGPSIHSLS 476
Query: 518 QDIDHVALTRNLDR 531
Q +DH+ L+RN R
Sbjct: 477 QSMDHLTLSRNSGR 490
>Medtr5g031720.1 | RNA-binding KH domain protein | HC |
chr5:13608841-13602499 | 20130731
Length = 596
Score = 244 bits (622), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 154/437 (35%), Positives = 236/437 (54%), Gaps = 18/437 (4%)
Query: 33 RSSNHPPSIPTPSGHVAFRILCHSSRIGGVIGKSGAVIKNLQQSTGAKIRVEDAPAESPD 92
R++ P G +AFR++CHSS +GG+IG SG+++ L++ TG KI EDA + D
Sbjct: 24 RNNRKRPVFKLLPGQIAFRLVCHSSTVGGLIGSSGSIVSQLRRETGCKIHCEDAVVGTDD 83
Query: 93 RVIMVIADAALTGRCHIGGEEIEFSKAQEALVKVFDRILEVAEEMGGIEIGDRAVSCRLV 152
RVI+VI + +G E+E S AQE +V+VFDR+ + E GG + V +L+
Sbjct: 84 RVILVIGSMSDRKGIVLGDREMEVSNAQEGVVRVFDRVWGLESEKGG----NGEVYGKLL 139
Query: 153 ADAAQAGSVIGKGGTVVEKIKKDTGCKIRVSGDNMPACTSSSDEVIEIEGSVSSVKKALI 212
A ++Q G+++GKGG + I+ ++G IRV P C + +E+I I G +VKKALI
Sbjct: 140 AHSSQVGAIVGKGGKNISNIRNNSGSNIRVC--PAPHCAAKDEELILITGESLAVKKALI 197
Query: 213 AVSRRLQDCSAADRIKMVGSKPYEVFQHETLPAVPRET-FTDRHMDHHLQRXXXXXXXXX 271
VS LQDC ++ + + P T+ + R T +T + HL
Sbjct: 198 YVSYCLQDCPPMGKVSL-NTPP-------TINSSDRSTSYTHEDLFPHLNSWLPSMEGLS 249
Query: 272 XXXXGVHSLPAEVNRVSPRESKALQQEVTFKIICSNDRXXXXXXXXXXXXRALQSETGAT 331
+ A N S +SK V F+++CSN+ R + TGA+
Sbjct: 250 INDASKQTTNANGN--SSLDSKGSGHAVVFRLLCSNNVAGSVIGKKGSIVRTFEIRTGAS 307
Query: 332 ISIGPAVADCDDRLISITASENPESRYSPAQKAVVLVFSRSVEAAIEKGIDSGLNKGSSV 391
I P + ++R+++I+A EN ES SPAQ AV+LVF+R E I G S V
Sbjct: 308 IVFAPPLGQYEERIVTISAFENLESSNSPAQDAVILVFTRIAEDHIRNGFQPATAVESPV 367
Query: 392 TARLVVPSNQVGCLLGKGGVIVSEMRRATGASIRIIGADQVPKCASDNDQVVQISGEFSN 451
TARL++ ++ + L G G ++SE+R+ +GA I+++ + +P ASDND VVQI+G +
Sbjct: 368 TARLLITTSTLHLLTGNEGQVISELRQVSGADIQLLHGEPIPN-ASDNDVVVQITGGYRC 426
Query: 452 VQDALYNATGRLRDNLL 468
V++AL T +RDN L
Sbjct: 427 VENALRKITSIIRDNPL 443
>Medtr4g008080.1 | RNA-binding KH domain protein | HC |
chr4:1379696-1384039 | 20130731
Length = 605
Score = 211 bits (537), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 155/444 (34%), Positives = 229/444 (51%), Gaps = 61/444 (13%)
Query: 28 SSKRARSSNHPPSIPTPSGHVAFRILCHSSRIGGVIGKSGAVIKNLQQSTGAKIRVEDAP 87
S+ R + PP+ P FRILC +++ ++ SG G KI ++D
Sbjct: 2 SNNNKRRYHVPPTQPD----TVFRILCPAAKSDSLLSLSG---------DGVKILIDDFA 48
Query: 88 AE--SPDRVIMVIADAALTGRCHIGGEEIEFSKAQEALVKVFDRILEVAEEMGGIEIGDR 145
+ S D I+VI AA S AQ AL++VF+RI+E + +
Sbjct: 49 GDVTSSDERIVVIISAAAE-----------ESAAQLALIRVFERIVEKDNNEENNKKSNS 97
Query: 146 AVSCRLVADAAQAGSVIGKGGTVVEKIKKDTGCKIRVSGDNMPACTSSSDEVIEIEGSVS 205
+V CRL+A + Q G V+G+GG +VEKI++++G ++R+ + DE I+I G+ +
Sbjct: 98 SVGCRLLAPSYQVGCVLGRGGKIVEKIRQESGAQVRILPKDHSPIPPPGDEFIQITGNFN 157
Query: 206 SVKKALIAVSRRLQD-CSAADRIKMVGSKPYEVFQHETLPAVPRETFTDRHMDHHLQRXX 264
+VKKAL+AVS LQD + K G E + P P DHH
Sbjct: 158 AVKKALLAVSSCLQDNVGNSGGFKSSGGAQVEPYPQRG-PHPP---------DHH----- 202
Query: 265 XXXXXXXXXXXGVHSLPAEVNRVSPRESKALQQEVTFKIICSNDRXXXXXXXXXXXXRAL 324
G S P N P +++EV +K++C D+ RAL
Sbjct: 203 ---------SRGYSSFPGSEN-ARPAHRMFVEEEVVYKMLCQQDKVGSLIGKGGSVVRAL 252
Query: 325 QSETGATISIGPAVADCDDRLISITASENPESRYSPAQKAVVLVFSRSVEAAIEKGIDSG 384
Q+ETGA+I I A D D+R++ I+A EN + ++SPAQ AV+ V R E G
Sbjct: 253 QNETGASIQIVDAGPDSDERVVVISALENSDQKHSPAQDAVIRVHGRLTEI--------G 304
Query: 385 LNKGSSVTARLVVPSNQVGCLLGKGGVIVSEMRRATGASIRIIGADQVPKCASDNDQVVQ 444
++V ARL+V S QVGCLLGKGG ++SEMRR TGA+IRI +Q+ K S N++VVQ
Sbjct: 305 FEHSNAVVARLLVRSPQVGCLLGKGGHVISEMRRVTGANIRIFSKEQI-KYISHNEEVVQ 363
Query: 445 ISGEFSNVQDALYNATGRLRDNLL 468
+ G +VQDAL++ T R+R+ ++
Sbjct: 364 VIGTLQSVQDALFHITSRIRETII 387
>Medtr7g011080.2 | RNA-binding KH domain protein | HC |
chr7:2893165-2900092 | 20130731
Length = 571
Score = 191 bits (484), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 143/463 (30%), Positives = 232/463 (50%), Gaps = 45/463 (9%)
Query: 26 NGSSKRARSSNHPPSIPTPSGHV-----AFRILCHSSRIGGVIGKSGAVIKNLQQSTGAK 80
N ++ + R+ N + P + H+ +R LC +IG +IG+ G ++K L+ T AK
Sbjct: 22 NRTNNKRRNPNTDETTPRDTFHITQDDTVYRYLCPVRKIGSIIGRGGEIVKQLRLDTKAK 81
Query: 81 IRVEDAPAESPDRVIMVIADAALTGRCHIGGEEIEFSKAQEALVKVFDRILEVAEEMGGI 140
IR+ + +RV+ V + + + GE + A +ALV++ ++ +AE++ G+
Sbjct: 82 IRIGETVPGCDERVVTVYSVSDESNDFEDSGEFM--CPAMDALVRIHQKV--IAEDLRGV 137
Query: 141 EI---------GDRAVSCRLVADAAQAGSVIGKGGTVVEKIKKDTGCKIRV-SGDNMPAC 190
E G V+ +L+ + Q G VIGKGG +V+ I+ +TG +IR+ D +P C
Sbjct: 138 EDEDVDMEKVDGGDLVTAKLLVASDQIGCVIGKGGQIVQNIRSETGAQIRILKDDRLPLC 197
Query: 191 TSSSDEVIEIEGSVSSVKKALIAVSRRLQDCSAADRIKMVGSKPYEVFQHETLPAVP--- 247
+SDE+++I G ++ VKKALI V+ RL D P QH AVP
Sbjct: 198 ALNSDELVQISGEIAVVKKALIQVAARLHD------------NPSRT-QHLLTSAVPGVY 244
Query: 248 --RETFTDRHMDHHLQRXXXXXXXXXXXXXGVHSLPAEVNRVSPRESKALQQEVTFKIIC 305
+ H + V P + S E +E + + +C
Sbjct: 245 AASGSMVGSHGGAPIMGMAPIGGGYGGYKGDVVDYPRSMYPGSRDEGSV--KEFSVRFVC 302
Query: 306 SNDRXXXXXXXXXXXXRALQSETGATISIGPAVADCDDRLISITASENPESRYSPAQKAV 365
++ ++GA I + + + DD LI+I+A E E +S +A
Sbjct: 303 PTANIGGVIGKGGGIINQIRQDSGANIKVDSSATEGDDCLIAISARELFEDPFSATIEAA 362
Query: 366 VLVFSRSVEAAIEKGIDSGLNKGSSVTARLVVPSNQVGCLLGKGGVIVSEMRRATGASIR 425
VL+ R E +E+ DSG+ S T+RL+V S+++GCL+GKGG I++EMRR T A+IR
Sbjct: 363 VLLQPRCSE-KVER--DSGI---LSFTSRLLVSSSRIGCLIGKGGSIITEMRRLTKANIR 416
Query: 426 IIGADQVPKCASDNDQVVQISGEFSNVQDALYNATGRLRDNLL 468
I+ + +PK A+++D++VQISGE +DAL RLR NL
Sbjct: 417 ILSKEDLPKIATEDDEMVQISGELDIAKDALLQVLTRLRANLF 459
Score = 61.2 bits (147), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 89/176 (50%), Gaps = 17/176 (9%)
Query: 73 LQQSTGAKIRVEDAPAESPDRVIMVIADAALTGRCHIGGEEIEFSKAQEALVKVFDRILE 132
++Q +GA I+V+ + E D +I + A E FS EA V + R E
Sbjct: 321 IRQDSGANIKVDSSATEGDDCLIAISARELF---------EDPFSATIEAAVLLQPRCSE 371
Query: 133 VAEEMGGIEIGDRAVSCRLVADAAQAGSVIGKGGTVVEKIKKDTGCKIRV-SGDNMPACT 191
E GI + + RL+ +++ G +IGKGG+++ ++++ T IR+ S +++P
Sbjct: 372 KVERDSGI----LSFTSRLLVSSSRIGCLIGKGGSIITEMRRLTKANIRILSKEDLPKIA 427
Query: 192 SSSDEVIEIEGSVSSVKKALIAVSRRLQDCSAADRIKMVGSKPYEVFQHETLPAVP 247
+ DE+++I G + K AL+ V RL+ + D+ + V S V + LPA P
Sbjct: 428 TEDDEMVQISGELDIAKDALLQVLTRLR-ANLFDKERSVSSLLPPVLAY--LPASP 480
>Medtr7g011080.1 | RNA-binding KH domain protein | HC |
chr7:2893165-2900092 | 20130731
Length = 571
Score = 191 bits (484), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 143/463 (30%), Positives = 232/463 (50%), Gaps = 45/463 (9%)
Query: 26 NGSSKRARSSNHPPSIPTPSGHV-----AFRILCHSSRIGGVIGKSGAVIKNLQQSTGAK 80
N ++ + R+ N + P + H+ +R LC +IG +IG+ G ++K L+ T AK
Sbjct: 22 NRTNNKRRNPNTDETTPRDTFHITQDDTVYRYLCPVRKIGSIIGRGGEIVKQLRLDTKAK 81
Query: 81 IRVEDAPAESPDRVIMVIADAALTGRCHIGGEEIEFSKAQEALVKVFDRILEVAEEMGGI 140
IR+ + +RV+ V + + + GE + A +ALV++ ++ +AE++ G+
Sbjct: 82 IRIGETVPGCDERVVTVYSVSDESNDFEDSGEFM--CPAMDALVRIHQKV--IAEDLRGV 137
Query: 141 EI---------GDRAVSCRLVADAAQAGSVIGKGGTVVEKIKKDTGCKIRV-SGDNMPAC 190
E G V+ +L+ + Q G VIGKGG +V+ I+ +TG +IR+ D +P C
Sbjct: 138 EDEDVDMEKVDGGDLVTAKLLVASDQIGCVIGKGGQIVQNIRSETGAQIRILKDDRLPLC 197
Query: 191 TSSSDEVIEIEGSVSSVKKALIAVSRRLQDCSAADRIKMVGSKPYEVFQHETLPAVP--- 247
+SDE+++I G ++ VKKALI V+ RL D P QH AVP
Sbjct: 198 ALNSDELVQISGEIAVVKKALIQVAARLHD------------NPSRT-QHLLTSAVPGVY 244
Query: 248 --RETFTDRHMDHHLQRXXXXXXXXXXXXXGVHSLPAEVNRVSPRESKALQQEVTFKIIC 305
+ H + V P + S E +E + + +C
Sbjct: 245 AASGSMVGSHGGAPIMGMAPIGGGYGGYKGDVVDYPRSMYPGSRDEGSV--KEFSVRFVC 302
Query: 306 SNDRXXXXXXXXXXXXRALQSETGATISIGPAVADCDDRLISITASENPESRYSPAQKAV 365
++ ++GA I + + + DD LI+I+A E E +S +A
Sbjct: 303 PTANIGGVIGKGGGIINQIRQDSGANIKVDSSATEGDDCLIAISARELFEDPFSATIEAA 362
Query: 366 VLVFSRSVEAAIEKGIDSGLNKGSSVTARLVVPSNQVGCLLGKGGVIVSEMRRATGASIR 425
VL+ R E +E+ DSG+ S T+RL+V S+++GCL+GKGG I++EMRR T A+IR
Sbjct: 363 VLLQPRCSE-KVER--DSGI---LSFTSRLLVSSSRIGCLIGKGGSIITEMRRLTKANIR 416
Query: 426 IIGADQVPKCASDNDQVVQISGEFSNVQDALYNATGRLRDNLL 468
I+ + +PK A+++D++VQISGE +DAL RLR NL
Sbjct: 417 ILSKEDLPKIATEDDEMVQISGELDIAKDALLQVLTRLRANLF 459
Score = 61.2 bits (147), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 89/176 (50%), Gaps = 17/176 (9%)
Query: 73 LQQSTGAKIRVEDAPAESPDRVIMVIADAALTGRCHIGGEEIEFSKAQEALVKVFDRILE 132
++Q +GA I+V+ + E D +I + A E FS EA V + R E
Sbjct: 321 IRQDSGANIKVDSSATEGDDCLIAISARELF---------EDPFSATIEAAVLLQPRCSE 371
Query: 133 VAEEMGGIEIGDRAVSCRLVADAAQAGSVIGKGGTVVEKIKKDTGCKIRV-SGDNMPACT 191
E GI + + RL+ +++ G +IGKGG+++ ++++ T IR+ S +++P
Sbjct: 372 KVERDSGI----LSFTSRLLVSSSRIGCLIGKGGSIITEMRRLTKANIRILSKEDLPKIA 427
Query: 192 SSSDEVIEIEGSVSSVKKALIAVSRRLQDCSAADRIKMVGSKPYEVFQHETLPAVP 247
+ DE+++I G + K AL+ V RL+ + D+ + V S V + LPA P
Sbjct: 428 TEDDEMVQISGELDIAKDALLQVLTRLR-ANLFDKERSVSSLLPPVLAY--LPASP 480
>Medtr6g012630.1 | RNA-binding KH domain protein | HC |
chr6:3864952-3868465 | 20130731
Length = 553
Score = 189 bits (480), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 137/427 (32%), Positives = 219/427 (51%), Gaps = 32/427 (7%)
Query: 50 FRILCHSSRIGGVIGKSGAVIKNLQQSTGAKIRVEDAPAESPDRVIMVIADAALTGRCHI 109
FR LC +IG +IG+ G ++K L+ T AKIR+ + +RV+ V + + T
Sbjct: 49 FRYLCPGRKIGSIIGRGGEIVKQLRVETKAKIRIGETVPGCDERVVTVYSSSDETNTVDD 108
Query: 110 GGEEIEFSKAQEALVKVFDRILEVAEEMGG--IEIGDRAVSCRLVADAAQAGSVIGKGGT 167
G + + S A++AL K+ DR+ VAE++ E G V+ +L+ + Q G V+GKGG
Sbjct: 109 GDKLV--SPAEDALFKIHDRV--VAEDLHSDQEEEGGPQVNAKLLVPSDQIGCVLGKGGQ 164
Query: 168 VVEKIKKDTGCKIRV-SGDNMPACTSSSDEVIEIEGSVSSVKKALIAVSRRLQDCSAADR 226
+V+ ++ +TG +IR+ D++PAC SDE+++I G + VKKAL ++ RL +
Sbjct: 165 IVQNLRSETGAQIRILKDDHVPACALRSDELVQISGDAAVVKKALHQIASRLHHNPSRT- 223
Query: 227 IKMVGSKPYEVFQHETLPAVPRETFTDRHMDHHLQRXXXXXXXXXXXXXGVHS-----LP 281
QH AVP + + G + P
Sbjct: 224 ------------QHLLGSAVPSVYPSGGSLMGPTAGPPIVGMAPLVGPYGGYKSDTGDWP 271
Query: 282 AEVNRVSPRESKALQQEVTFKIICSNDRXXXXXXXXXXXXRALQSETGATISIGPAVADC 341
+PR+ + +E + +++C ++ ++GATI + + A
Sbjct: 272 PRSMYSAPRDEISSSKEFSVRLVCPTGNLGGVIGKGGGIINQIRQDSGATIKVDSS-AKG 330
Query: 342 DDRLISITASENPESRYSPAQKAVVLVFSRSVEAAIEKGIDSGLNKGSSVTARLVVPSNQ 401
DD LI+I+ E E +SP +A VL+ R E + DSG+ S T RL+V S++
Sbjct: 331 DDCLITISTKEFFEETFSPTVEAAVLLQPRCSEKSER---DSGI---ISFTTRLLVSSSR 384
Query: 402 VGCLLGKGGVIVSEMRRATGASIRIIGADQVPKCASDNDQVVQISGEFSNVQDALYNATG 461
+GCL+GKGG I++EMRR T ++IRI+ + +PK ASD+D++VQISG+ +DAL
Sbjct: 385 IGCLIGKGGSIITEMRRLTKSNIRILSKENLPKIASDDDEMVQISGDLDVAKDALVQVLT 444
Query: 462 RLRDNLL 468
RLR NL
Sbjct: 445 RLRANLF 451
Score = 109 bits (272), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 70/195 (35%), Positives = 104/195 (53%), Gaps = 16/195 (8%)
Query: 290 RESKALQQEVT-FKIICSNDRXXXXXXXXXXXXRALQSETGATISIGPAVADCDDRLISI 348
RE + +E T F+ +C + + L+ ET A I IG V CD+R++++
Sbjct: 37 REQFVINKEDTVFRYLCPGRKIGSIIGRGGEIVKQLRVETKAKIRIGETVPGCDERVVTV 96
Query: 349 TAS-------ENPESRYSPAQKAVVLVFSRSVEAAIEKGIDSGLNKGSSVTARLVVPSNQ 401
+S ++ + SPA+ A+ + R V + D G V A+L+VPS+Q
Sbjct: 97 YSSSDETNTVDDGDKLVSPAEDALFKIHDRVVAEDLHS--DQEEEGGPQVNAKLLVPSDQ 154
Query: 402 VGCLLGKGGVIVSEMRRATGASIRIIGADQVPKCASDNDQVVQISGEFSNVQDALYNATG 461
+GC+LGKGG IV +R TGA IRI+ D VP CA +D++VQISG+ + V+ AL+
Sbjct: 155 IGCVLGKGGQIVQNLRSETGAQIRILKDDHVPACALRSDELVQISGDAAVVKKALHQIAS 214
Query: 462 RLRDN------LLGS 470
RL N LLGS
Sbjct: 215 RLHHNPSRTQHLLGS 229
Score = 63.9 bits (154), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 66/227 (29%), Positives = 114/227 (50%), Gaps = 26/227 (11%)
Query: 2 GSSFFSPPAKRSMLGISDPDPYSPNGSSKRARSSNHPP----SIP----TPSGHVAFRIL 53
G S P A ++G++ P ++ + + PP S P + S + R++
Sbjct: 238 GGSLMGPTAGPPIVGMA---PLVGPYGGYKSDTGDWPPRSMYSAPRDEISSSKEFSVRLV 294
Query: 54 CHSSRIGGVIGKSGAVIKNLQQSTGAKIRVEDAPAESPDRVIMVIADAALTGRCHIGGEE 113
C + +GGVIGK G +I ++Q +GA I+V D+ A+ D +I + E
Sbjct: 295 CPTGNLGGVIGKGGGIINQIRQDSGATIKV-DSSAKGDDCLITISTKEFF---------E 344
Query: 114 IEFSKAQEALVKVFDRILEVAEEMGGIEIGDRAVSCRLVADAAQAGSVIGKGGTVVEKIK 173
FS EA V + R E +E GI + + RL+ +++ G +IGKGG+++ +++
Sbjct: 345 ETFSPTVEAAVLLQPRCSEKSERDSGI----ISFTTRLLVSSSRIGCLIGKGGSIITEMR 400
Query: 174 KDTGCKIRV-SGDNMPACTSSSDEVIEIEGSVSSVKKALIAVSRRLQ 219
+ T IR+ S +N+P S DE+++I G + K AL+ V RL+
Sbjct: 401 RLTKSNIRILSKENLPKIASDDDEMVQISGDLDVAKDALVQVLTRLR 447
>Medtr6g012630.5 | RNA-binding KH domain protein | HC |
chr6:3864952-3868465 | 20130731
Length = 553
Score = 189 bits (480), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 137/427 (32%), Positives = 219/427 (51%), Gaps = 32/427 (7%)
Query: 50 FRILCHSSRIGGVIGKSGAVIKNLQQSTGAKIRVEDAPAESPDRVIMVIADAALTGRCHI 109
FR LC +IG +IG+ G ++K L+ T AKIR+ + +RV+ V + + T
Sbjct: 49 FRYLCPGRKIGSIIGRGGEIVKQLRVETKAKIRIGETVPGCDERVVTVYSSSDETNTVDD 108
Query: 110 GGEEIEFSKAQEALVKVFDRILEVAEEMGG--IEIGDRAVSCRLVADAAQAGSVIGKGGT 167
G + + S A++AL K+ DR+ VAE++ E G V+ +L+ + Q G V+GKGG
Sbjct: 109 GDKLV--SPAEDALFKIHDRV--VAEDLHSDQEEEGGPQVNAKLLVPSDQIGCVLGKGGQ 164
Query: 168 VVEKIKKDTGCKIRV-SGDNMPACTSSSDEVIEIEGSVSSVKKALIAVSRRLQDCSAADR 226
+V+ ++ +TG +IR+ D++PAC SDE+++I G + VKKAL ++ RL +
Sbjct: 165 IVQNLRSETGAQIRILKDDHVPACALRSDELVQISGDAAVVKKALHQIASRLHHNPSRT- 223
Query: 227 IKMVGSKPYEVFQHETLPAVPRETFTDRHMDHHLQRXXXXXXXXXXXXXGVHS-----LP 281
QH AVP + + G + P
Sbjct: 224 ------------QHLLGSAVPSVYPSGGSLMGPTAGPPIVGMAPLVGPYGGYKSDTGDWP 271
Query: 282 AEVNRVSPRESKALQQEVTFKIICSNDRXXXXXXXXXXXXRALQSETGATISIGPAVADC 341
+PR+ + +E + +++C ++ ++GATI + + A
Sbjct: 272 PRSMYSAPRDEISSSKEFSVRLVCPTGNLGGVIGKGGGIINQIRQDSGATIKVDSS-AKG 330
Query: 342 DDRLISITASENPESRYSPAQKAVVLVFSRSVEAAIEKGIDSGLNKGSSVTARLVVPSNQ 401
DD LI+I+ E E +SP +A VL+ R E + DSG+ S T RL+V S++
Sbjct: 331 DDCLITISTKEFFEETFSPTVEAAVLLQPRCSEKSER---DSGI---ISFTTRLLVSSSR 384
Query: 402 VGCLLGKGGVIVSEMRRATGASIRIIGADQVPKCASDNDQVVQISGEFSNVQDALYNATG 461
+GCL+GKGG I++EMRR T ++IRI+ + +PK ASD+D++VQISG+ +DAL
Sbjct: 385 IGCLIGKGGSIITEMRRLTKSNIRILSKENLPKIASDDDEMVQISGDLDVAKDALVQVLT 444
Query: 462 RLRDNLL 468
RLR NL
Sbjct: 445 RLRANLF 451
Score = 109 bits (272), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 70/195 (35%), Positives = 104/195 (53%), Gaps = 16/195 (8%)
Query: 290 RESKALQQEVT-FKIICSNDRXXXXXXXXXXXXRALQSETGATISIGPAVADCDDRLISI 348
RE + +E T F+ +C + + L+ ET A I IG V CD+R++++
Sbjct: 37 REQFVINKEDTVFRYLCPGRKIGSIIGRGGEIVKQLRVETKAKIRIGETVPGCDERVVTV 96
Query: 349 TAS-------ENPESRYSPAQKAVVLVFSRSVEAAIEKGIDSGLNKGSSVTARLVVPSNQ 401
+S ++ + SPA+ A+ + R V + D G V A+L+VPS+Q
Sbjct: 97 YSSSDETNTVDDGDKLVSPAEDALFKIHDRVVAEDLHS--DQEEEGGPQVNAKLLVPSDQ 154
Query: 402 VGCLLGKGGVIVSEMRRATGASIRIIGADQVPKCASDNDQVVQISGEFSNVQDALYNATG 461
+GC+LGKGG IV +R TGA IRI+ D VP CA +D++VQISG+ + V+ AL+
Sbjct: 155 IGCVLGKGGQIVQNLRSETGAQIRILKDDHVPACALRSDELVQISGDAAVVKKALHQIAS 214
Query: 462 RLRDN------LLGS 470
RL N LLGS
Sbjct: 215 RLHHNPSRTQHLLGS 229
Score = 63.9 bits (154), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 66/227 (29%), Positives = 114/227 (50%), Gaps = 26/227 (11%)
Query: 2 GSSFFSPPAKRSMLGISDPDPYSPNGSSKRARSSNHPP----SIP----TPSGHVAFRIL 53
G S P A ++G++ P ++ + + PP S P + S + R++
Sbjct: 238 GGSLMGPTAGPPIVGMA---PLVGPYGGYKSDTGDWPPRSMYSAPRDEISSSKEFSVRLV 294
Query: 54 CHSSRIGGVIGKSGAVIKNLQQSTGAKIRVEDAPAESPDRVIMVIADAALTGRCHIGGEE 113
C + +GGVIGK G +I ++Q +GA I+V D+ A+ D +I + E
Sbjct: 295 CPTGNLGGVIGKGGGIINQIRQDSGATIKV-DSSAKGDDCLITISTKEFF---------E 344
Query: 114 IEFSKAQEALVKVFDRILEVAEEMGGIEIGDRAVSCRLVADAAQAGSVIGKGGTVVEKIK 173
FS EA V + R E +E GI + + RL+ +++ G +IGKGG+++ +++
Sbjct: 345 ETFSPTVEAAVLLQPRCSEKSERDSGI----ISFTTRLLVSSSRIGCLIGKGGSIITEMR 400
Query: 174 KDTGCKIRV-SGDNMPACTSSSDEVIEIEGSVSSVKKALIAVSRRLQ 219
+ T IR+ S +N+P S DE+++I G + K AL+ V RL+
Sbjct: 401 RLTKSNIRILSKENLPKIASDDDEMVQISGDLDVAKDALVQVLTRLR 447
>Medtr6g012630.2 | RNA-binding KH domain protein | HC |
chr6:3864952-3868465 | 20130731
Length = 553
Score = 189 bits (480), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 137/427 (32%), Positives = 219/427 (51%), Gaps = 32/427 (7%)
Query: 50 FRILCHSSRIGGVIGKSGAVIKNLQQSTGAKIRVEDAPAESPDRVIMVIADAALTGRCHI 109
FR LC +IG +IG+ G ++K L+ T AKIR+ + +RV+ V + + T
Sbjct: 49 FRYLCPGRKIGSIIGRGGEIVKQLRVETKAKIRIGETVPGCDERVVTVYSSSDETNTVDD 108
Query: 110 GGEEIEFSKAQEALVKVFDRILEVAEEMGG--IEIGDRAVSCRLVADAAQAGSVIGKGGT 167
G + + S A++AL K+ DR+ VAE++ E G V+ +L+ + Q G V+GKGG
Sbjct: 109 GDKLV--SPAEDALFKIHDRV--VAEDLHSDQEEEGGPQVNAKLLVPSDQIGCVLGKGGQ 164
Query: 168 VVEKIKKDTGCKIRV-SGDNMPACTSSSDEVIEIEGSVSSVKKALIAVSRRLQDCSAADR 226
+V+ ++ +TG +IR+ D++PAC SDE+++I G + VKKAL ++ RL +
Sbjct: 165 IVQNLRSETGAQIRILKDDHVPACALRSDELVQISGDAAVVKKALHQIASRLHHNPSRT- 223
Query: 227 IKMVGSKPYEVFQHETLPAVPRETFTDRHMDHHLQRXXXXXXXXXXXXXGVHS-----LP 281
QH AVP + + G + P
Sbjct: 224 ------------QHLLGSAVPSVYPSGGSLMGPTAGPPIVGMAPLVGPYGGYKSDTGDWP 271
Query: 282 AEVNRVSPRESKALQQEVTFKIICSNDRXXXXXXXXXXXXRALQSETGATISIGPAVADC 341
+PR+ + +E + +++C ++ ++GATI + + A
Sbjct: 272 PRSMYSAPRDEISSSKEFSVRLVCPTGNLGGVIGKGGGIINQIRQDSGATIKVDSS-AKG 330
Query: 342 DDRLISITASENPESRYSPAQKAVVLVFSRSVEAAIEKGIDSGLNKGSSVTARLVVPSNQ 401
DD LI+I+ E E +SP +A VL+ R E + DSG+ S T RL+V S++
Sbjct: 331 DDCLITISTKEFFEETFSPTVEAAVLLQPRCSEKSER---DSGI---ISFTTRLLVSSSR 384
Query: 402 VGCLLGKGGVIVSEMRRATGASIRIIGADQVPKCASDNDQVVQISGEFSNVQDALYNATG 461
+GCL+GKGG I++EMRR T ++IRI+ + +PK ASD+D++VQISG+ +DAL
Sbjct: 385 IGCLIGKGGSIITEMRRLTKSNIRILSKENLPKIASDDDEMVQISGDLDVAKDALVQVLT 444
Query: 462 RLRDNLL 468
RLR NL
Sbjct: 445 RLRANLF 451
Score = 109 bits (272), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 70/195 (35%), Positives = 104/195 (53%), Gaps = 16/195 (8%)
Query: 290 RESKALQQEVT-FKIICSNDRXXXXXXXXXXXXRALQSETGATISIGPAVADCDDRLISI 348
RE + +E T F+ +C + + L+ ET A I IG V CD+R++++
Sbjct: 37 REQFVINKEDTVFRYLCPGRKIGSIIGRGGEIVKQLRVETKAKIRIGETVPGCDERVVTV 96
Query: 349 TAS-------ENPESRYSPAQKAVVLVFSRSVEAAIEKGIDSGLNKGSSVTARLVVPSNQ 401
+S ++ + SPA+ A+ + R V + D G V A+L+VPS+Q
Sbjct: 97 YSSSDETNTVDDGDKLVSPAEDALFKIHDRVVAEDLHS--DQEEEGGPQVNAKLLVPSDQ 154
Query: 402 VGCLLGKGGVIVSEMRRATGASIRIIGADQVPKCASDNDQVVQISGEFSNVQDALYNATG 461
+GC+LGKGG IV +R TGA IRI+ D VP CA +D++VQISG+ + V+ AL+
Sbjct: 155 IGCVLGKGGQIVQNLRSETGAQIRILKDDHVPACALRSDELVQISGDAAVVKKALHQIAS 214
Query: 462 RLRDN------LLGS 470
RL N LLGS
Sbjct: 215 RLHHNPSRTQHLLGS 229
Score = 63.9 bits (154), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 66/227 (29%), Positives = 114/227 (50%), Gaps = 26/227 (11%)
Query: 2 GSSFFSPPAKRSMLGISDPDPYSPNGSSKRARSSNHPP----SIP----TPSGHVAFRIL 53
G S P A ++G++ P ++ + + PP S P + S + R++
Sbjct: 238 GGSLMGPTAGPPIVGMA---PLVGPYGGYKSDTGDWPPRSMYSAPRDEISSSKEFSVRLV 294
Query: 54 CHSSRIGGVIGKSGAVIKNLQQSTGAKIRVEDAPAESPDRVIMVIADAALTGRCHIGGEE 113
C + +GGVIGK G +I ++Q +GA I+V D+ A+ D +I + E
Sbjct: 295 CPTGNLGGVIGKGGGIINQIRQDSGATIKV-DSSAKGDDCLITISTKEFF---------E 344
Query: 114 IEFSKAQEALVKVFDRILEVAEEMGGIEIGDRAVSCRLVADAAQAGSVIGKGGTVVEKIK 173
FS EA V + R E +E GI + + RL+ +++ G +IGKGG+++ +++
Sbjct: 345 ETFSPTVEAAVLLQPRCSEKSERDSGI----ISFTTRLLVSSSRIGCLIGKGGSIITEMR 400
Query: 174 KDTGCKIRV-SGDNMPACTSSSDEVIEIEGSVSSVKKALIAVSRRLQ 219
+ T IR+ S +N+P S DE+++I G + K AL+ V RL+
Sbjct: 401 RLTKSNIRILSKENLPKIASDDDEMVQISGDLDVAKDALVQVLTRLR 447
>Medtr6g012630.4 | RNA-binding KH domain protein | HC |
chr6:3864952-3867538 | 20130731
Length = 538
Score = 188 bits (478), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 138/427 (32%), Positives = 219/427 (51%), Gaps = 32/427 (7%)
Query: 50 FRILCHSSRIGGVIGKSGAVIKNLQQSTGAKIRVEDAPAESPDRVIMVIADAALTGRCHI 109
FR LC +IG +IG+ G ++K L+ T AKIR+ + +RV+ V + + T
Sbjct: 49 FRYLCPGRKIGSIIGRGGEIVKQLRVETKAKIRIGETVPGCDERVVTVYSSSDETNTVDD 108
Query: 110 GGEEIEFSKAQEALVKVFDRILEVAEEMGG--IEIGDRAVSCRLVADAAQAGSVIGKGGT 167
G + + S A++AL K+ DR+ VAE++ E G V+ +L+ + Q G V+GKGG
Sbjct: 109 GDKLV--SPAEDALFKIHDRV--VAEDLHSDQEEEGGPQVNAKLLVPSDQIGCVLGKGGQ 164
Query: 168 VVEKIKKDTGCKIRV-SGDNMPACTSSSDEVIEIEGSVSSVKKALIAVSRRLQDCSAADR 226
+V+ ++ +TG +IR+ D++PAC SDE+++I G + VKKAL ++ RL
Sbjct: 165 IVQNLRSETGAQIRILKDDHVPACALRSDELVQISGDAAVVKKALHQIASRLH------- 217
Query: 227 IKMVGSKPYEVFQHETLPAVPRETFTDRHMDHHLQRXXXXXXXXXXXXXGVHS-----LP 281
P QH AVP + + G + P
Sbjct: 218 -----HNPSRT-QHLLGSAVPSVYPSGGSLMGPTAGPPIVGMAPLVGPYGGYKSDTGDWP 271
Query: 282 AEVNRVSPRESKALQQEVTFKIICSNDRXXXXXXXXXXXXRALQSETGATISIGPAVADC 341
+PR+ + +E + +++C ++ ++GATI + + A
Sbjct: 272 PRSMYSAPRDEISSSKEFSVRLVCPTGNLGGVIGKGGGIINQIRQDSGATIKVDSS-AKG 330
Query: 342 DDRLISITASENPESRYSPAQKAVVLVFSRSVEAAIEKGIDSGLNKGSSVTARLVVPSNQ 401
DD LI+I+ E E +SP +A VL+ R E + DSG+ S T RL+V S++
Sbjct: 331 DDCLITISTKEFFEETFSPTVEAAVLLQPRCSEKSER---DSGI---ISFTTRLLVSSSR 384
Query: 402 VGCLLGKGGVIVSEMRRATGASIRIIGADQVPKCASDNDQVVQISGEFSNVQDALYNATG 461
+GCL+GKGG I++EMRR T ++IRI+ + +PK ASD+D++VQISG+ +DAL
Sbjct: 385 IGCLIGKGGSIITEMRRLTKSNIRILSKENLPKIASDDDEMVQISGDLDVAKDALVQVLT 444
Query: 462 RLRDNLL 468
RLR NL
Sbjct: 445 RLRANLF 451
Score = 109 bits (272), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 70/195 (35%), Positives = 104/195 (53%), Gaps = 16/195 (8%)
Query: 290 RESKALQQEVT-FKIICSNDRXXXXXXXXXXXXRALQSETGATISIGPAVADCDDRLISI 348
RE + +E T F+ +C + + L+ ET A I IG V CD+R++++
Sbjct: 37 REQFVINKEDTVFRYLCPGRKIGSIIGRGGEIVKQLRVETKAKIRIGETVPGCDERVVTV 96
Query: 349 TAS-------ENPESRYSPAQKAVVLVFSRSVEAAIEKGIDSGLNKGSSVTARLVVPSNQ 401
+S ++ + SPA+ A+ + R V + D G V A+L+VPS+Q
Sbjct: 97 YSSSDETNTVDDGDKLVSPAEDALFKIHDRVVAEDLHS--DQEEEGGPQVNAKLLVPSDQ 154
Query: 402 VGCLLGKGGVIVSEMRRATGASIRIIGADQVPKCASDNDQVVQISGEFSNVQDALYNATG 461
+GC+LGKGG IV +R TGA IRI+ D VP CA +D++VQISG+ + V+ AL+
Sbjct: 155 IGCVLGKGGQIVQNLRSETGAQIRILKDDHVPACALRSDELVQISGDAAVVKKALHQIAS 214
Query: 462 RLRDN------LLGS 470
RL N LLGS
Sbjct: 215 RLHHNPSRTQHLLGS 229
Score = 63.9 bits (154), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 66/227 (29%), Positives = 114/227 (50%), Gaps = 26/227 (11%)
Query: 2 GSSFFSPPAKRSMLGISDPDPYSPNGSSKRARSSNHPP----SIP----TPSGHVAFRIL 53
G S P A ++G++ P ++ + + PP S P + S + R++
Sbjct: 238 GGSLMGPTAGPPIVGMA---PLVGPYGGYKSDTGDWPPRSMYSAPRDEISSSKEFSVRLV 294
Query: 54 CHSSRIGGVIGKSGAVIKNLQQSTGAKIRVEDAPAESPDRVIMVIADAALTGRCHIGGEE 113
C + +GGVIGK G +I ++Q +GA I+V D+ A+ D +I + E
Sbjct: 295 CPTGNLGGVIGKGGGIINQIRQDSGATIKV-DSSAKGDDCLITISTKEFF---------E 344
Query: 114 IEFSKAQEALVKVFDRILEVAEEMGGIEIGDRAVSCRLVADAAQAGSVIGKGGTVVEKIK 173
FS EA V + R E +E GI + + RL+ +++ G +IGKGG+++ +++
Sbjct: 345 ETFSPTVEAAVLLQPRCSEKSERDSGI----ISFTTRLLVSSSRIGCLIGKGGSIITEMR 400
Query: 174 KDTGCKIRV-SGDNMPACTSSSDEVIEIEGSVSSVKKALIAVSRRLQ 219
+ T IR+ S +N+P S DE+++I G + K AL+ V RL+
Sbjct: 401 RLTKSNIRILSKENLPKIASDDDEMVQISGDLDVAKDALVQVLTRLR 447
>Medtr3g091800.1 | RNA-binding KH domain protein | HC |
chr3:41793839-41789438 | 20130731
Length = 646
Score = 177 bits (449), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 132/442 (29%), Positives = 218/442 (49%), Gaps = 47/442 (10%)
Query: 49 AFRILCHSSRIGGVIGKSGAVIKNLQQSTGAKIRVEDAPAESPDRVIMVIADAALTGRCH 108
++R+LCH R GGVIGKSG++IK+++Q TGA I V + A +R+I I+D T R
Sbjct: 64 SYRLLCHDLRAGGVIGKSGSIIKSIRQHTGAWINVHEPVAGDEERIIE-ISD---TRRRD 119
Query: 109 IGGEEIEFSKAQEALVKVFDRILE-------VAEEMGGIEIGDRAVSCRLVADAAQAGSV 161
G +FS AQEAL+ + +R+LE + GG G + VS RLV GS+
Sbjct: 120 PDGRMPQFSPAQEALLLIHERLLENDPGFEDEEDYGGGRGGGGKRVSSRLVVSKMHVGSL 179
Query: 162 IGKGGTVVEKIKKDTGCKIRV--SGDNMPACTSSSDEVIEIEGSVSSVKKALIAVSRRLQ 219
+GKGG ++E+++ +T +IR+ +P C S S+E++++ G + +VK A + +S RL+
Sbjct: 180 LGKGGKIIEQMRIETKTQIRILPRDSYLPRCVSMSEEIVQVTGDIHNVKNAFLVISSRLR 239
Query: 220 DCSAADRIKMVGSKPYEVFQHETLPAVPRETFTDRHMDHHLQRXXXXXXXXXXXXXGVHS 279
+ DR G + Q P F D +L G S
Sbjct: 240 ESQHRDR---SGERGGGGGQFHGRGHSPERFFPPD--DDYLPHVSSGSRRPSVERSGFGS 294
Query: 280 LPAEVNR---------------VSP--RESKALQQEVTFKIICSNDRXXXXXXXXXXXXR 322
A N +P + + +++ F+I+C DR
Sbjct: 295 RIATTNSRNNNHASISYSMDQGAAPVAHDEQPFYEDLIFRILCPVDRVDRIVGESGGILE 354
Query: 323 ALQSETGATISIGPAVADCDDRLISITASENPESRYSPAQKAVVLVFSRSVEAAIEKGID 382
LQ G + I V D++++ IT+ E P PAQ+A++ + + V+ +
Sbjct: 355 LLQDRVGVDVQISDRVGGSDEQMVIITSEEGPNDTMFPAQEALLHIQTHIVDLS------ 408
Query: 383 SGLNKGSSVTARLVVPSNQVGCLLGKGGVIVSEMRRATGASIRIIGADQVPKCASDNDQV 442
S +T RL+VPS+ + CL GK + SE+ R+TGAS++I+ +++P C ++ D++
Sbjct: 409 -----DSIITTRLIVPSSDIECLDGKNASL-SEIERSTGASVQILPREELPPCIANTDEL 462
Query: 443 VQISGEFSNVQDALYNATGRLR 464
VQI GE ++ + + T +LR
Sbjct: 463 VQIVGEIEAARNVILDVTAKLR 484
Score = 89.4 bits (220), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 57/178 (32%), Positives = 99/178 (55%), Gaps = 11/178 (6%)
Query: 300 TFKIICSNDRXXXXXXXXXXXXRALQSETGATISIGPAVADCDDRLISI--TASENPESR 357
+++++C + R ++++ TGA I++ VA ++R+I I T +P+ R
Sbjct: 64 SYRLLCHDLRAGGVIGKSGSIIKSIRQHTGAWINVHEPVAGDEERIIEISDTRRRDPDGR 123
Query: 358 ---YSPAQKAVVLVFSRSVE-----AAIEKGIDSGLNKGSSVTARLVVPSNQVGCLLGKG 409
+SPAQ+A++L+ R +E E G V++RLVV VG LLGKG
Sbjct: 124 MPQFSPAQEALLLIHERLLENDPGFEDEEDYGGGRGGGGKRVSSRLVVSKMHVGSLLGKG 183
Query: 410 GVIVSEMRRATGASIRIIGADQ-VPKCASDNDQVVQISGEFSNVQDALYNATGRLRDN 466
G I+ +MR T IRI+ D +P+C S ++++VQ++G+ NV++A + RLR++
Sbjct: 184 GKIIEQMRIETKTQIRILPRDSYLPRCVSMSEEIVQVTGDIHNVKNAFLVISSRLRES 241
>Medtr3g110650.2 | RNA-binding KH domain protein | HC |
chr3:51710144-51714718 | 20130731
Length = 662
Score = 171 bits (432), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 147/502 (29%), Positives = 241/502 (48%), Gaps = 90/502 (17%)
Query: 45 SGHVAFRILCHSSRIGGVIGKSGAVIKNLQQSTGAKIRVEDAPAESPDRVIMVIADAALT 104
S V FR+LC +S+IGGVIGK G++I ++ TG K+++E+ +RVI + ++
Sbjct: 29 SSSVVFRLLCPASKIGGVIGKGGSIISQIRHETGVKVKIEEPVPGCEERVITFLKESE-E 87
Query: 105 GRCHIGGE-----------------------------EIEFSKAQE---------ALVKV 126
G G E +E S++++ A++ V
Sbjct: 88 GSAEQGKEVNDNDESESKVKDDEEKGNGDDNEDKDSVSVEDSQSEKVNSNPTIMRAVMLV 147
Query: 127 FDRILEVAEEMGGIEIGDRAVSCRLVADAAQAGSVIGKGGTVVEKIKKDTGCKIRV-SGD 185
F+R VAE+ GG E RL+ + Q G ++GKGG+V++++ ++G +IR+ +
Sbjct: 148 FER---VAEDEGGDESKKGYFGLRLLILSNQVGCILGKGGSVIKRMSAESGAQIRILPKE 204
Query: 186 NMPACTSSSDEVIEIEGSVSSVKKALIAVSRRLQDCSAADRIKMVGSKPYEVFQHETLPA 245
+PAC S SDE+++I G V V++AL +V ++L + S D HE+LP
Sbjct: 205 EIPACASDSDELVQITGGVEVVRRALQSVFQQLVENSPRD--------------HESLPT 250
Query: 246 VPRETFTDRHMDHHLQ---RXXXXXXXXXXXXXGVHSLP--------------AEVNRVS 288
T + Q G + +P A + R+
Sbjct: 251 ----NLTGPSSHSYGQFPPNKRTFAGQGASFATGPNEIPVFHSAPMIPKFHEGAILGRMR 306
Query: 289 PRESKALQQEVTFKIICSNDRXXXXXXXXXXXXRALQSETGATISIGPAVADCDDRLISI 348
P + +TF+++C ++ + LQ ET + I + A+ +D +I I
Sbjct: 307 PP-----PEILTFRLLCPSESVGNLIGKGGSIIKMLQQETASEIKVIEAIPGSEDCIIII 361
Query: 349 TASENPESRYSPAQKAVVLVFSRSVEAAIEKGIDSGLNKGSSVTARLVVPSNQVGCLLGK 408
+ +P+ R SP Q+A+ V +R A ++ +K S+ AR++V S +GCLLGK
Sbjct: 362 SGPAHPDDRISPVQEAIFRVQNRISRAMLD-------SKEHSMLARVIVSSKHIGCLLGK 414
Query: 409 GGVIVSEMRRATGASIRIIGADQVPKCASDNDQVVQISGEFSNVQDALYNATGRLRDNLL 468
GG I++EMR +GA IR++G D+ PKC S++D+V+Q+SG V DAL T RLR+N
Sbjct: 415 GGSIIAEMRNLSGAHIRMLGKDKGPKCVSEDDEVIQVSGVIEAVHDALLQITTRLRNNFF 474
Query: 469 GSTQGSAATRSLSSVRADTSPY 490
SA S S+ SP+
Sbjct: 475 RDAFPSANFPSNSAFLDQHSPF 496
Score = 95.5 bits (236), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 59/184 (32%), Positives = 101/184 (54%), Gaps = 21/184 (11%)
Query: 38 PPSIPTPSGHVAFRILCHSSRIGGVIGKSGAVIKNLQQSTGAKIRVEDAPAESPDRVIMV 97
PP I T FR+LC S +G +IGK G++IK LQQ T ++I+V +A S D +I++
Sbjct: 308 PPEILT------FRLLCPSESVGNLIGKGGSIIKMLQQETASEIKVIEAIPGSEDCIIII 361
Query: 98 IADAALTGRCHIGGEEIEFSKAQEALVKVFDRILEVAEEMGGIEIGDRAVSCRLVADAAQ 157
A R S QEA+ +V +RI ++ + ++ R++ +
Sbjct: 362 SGPAHPDDR---------ISPVQEAIFRVQNRISRAM-----LDSKEHSMLARVIVSSKH 407
Query: 158 AGSVIGKGGTVVEKIKKDTGCKIRVSG-DNMPACTSSSDEVIEIEGSVSSVKKALIAVSR 216
G ++GKGG+++ +++ +G IR+ G D P C S DEVI++ G + +V AL+ ++
Sbjct: 408 IGCLLGKGGSIIAEMRNLSGAHIRMLGKDKGPKCVSEDDEVIQVSGVIEAVHDALLQITT 467
Query: 217 RLQD 220
RL++
Sbjct: 468 RLRN 471
>Medtr3g110650.1 | RNA-binding KH domain protein | HC |
chr3:51710144-51714718 | 20130731
Length = 662
Score = 171 bits (432), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 147/502 (29%), Positives = 241/502 (48%), Gaps = 90/502 (17%)
Query: 45 SGHVAFRILCHSSRIGGVIGKSGAVIKNLQQSTGAKIRVEDAPAESPDRVIMVIADAALT 104
S V FR+LC +S+IGGVIGK G++I ++ TG K+++E+ +RVI + ++
Sbjct: 29 SSSVVFRLLCPASKIGGVIGKGGSIISQIRHETGVKVKIEEPVPGCEERVITFLKESE-E 87
Query: 105 GRCHIGGE-----------------------------EIEFSKAQE---------ALVKV 126
G G E +E S++++ A++ V
Sbjct: 88 GSAEQGKEVNDNDESESKVKDDEEKGNGDDNEDKDSVSVEDSQSEKVNSNPTIMRAVMLV 147
Query: 127 FDRILEVAEEMGGIEIGDRAVSCRLVADAAQAGSVIGKGGTVVEKIKKDTGCKIRV-SGD 185
F+R VAE+ GG E RL+ + Q G ++GKGG+V++++ ++G +IR+ +
Sbjct: 148 FER---VAEDEGGDESKKGYFGLRLLILSNQVGCILGKGGSVIKRMSAESGAQIRILPKE 204
Query: 186 NMPACTSSSDEVIEIEGSVSSVKKALIAVSRRLQDCSAADRIKMVGSKPYEVFQHETLPA 245
+PAC S SDE+++I G V V++AL +V ++L + S D HE+LP
Sbjct: 205 EIPACASDSDELVQITGGVEVVRRALQSVFQQLVENSPRD--------------HESLPT 250
Query: 246 VPRETFTDRHMDHHLQ---RXXXXXXXXXXXXXGVHSLP--------------AEVNRVS 288
T + Q G + +P A + R+
Sbjct: 251 ----NLTGPSSHSYGQFPPNKRTFAGQGASFATGPNEIPVFHSAPMIPKFHEGAILGRMR 306
Query: 289 PRESKALQQEVTFKIICSNDRXXXXXXXXXXXXRALQSETGATISIGPAVADCDDRLISI 348
P + +TF+++C ++ + LQ ET + I + A+ +D +I I
Sbjct: 307 PP-----PEILTFRLLCPSESVGNLIGKGGSIIKMLQQETASEIKVIEAIPGSEDCIIII 361
Query: 349 TASENPESRYSPAQKAVVLVFSRSVEAAIEKGIDSGLNKGSSVTARLVVPSNQVGCLLGK 408
+ +P+ R SP Q+A+ V +R A ++ +K S+ AR++V S +GCLLGK
Sbjct: 362 SGPAHPDDRISPVQEAIFRVQNRISRAMLD-------SKEHSMLARVIVSSKHIGCLLGK 414
Query: 409 GGVIVSEMRRATGASIRIIGADQVPKCASDNDQVVQISGEFSNVQDALYNATGRLRDNLL 468
GG I++EMR +GA IR++G D+ PKC S++D+V+Q+SG V DAL T RLR+N
Sbjct: 415 GGSIIAEMRNLSGAHIRMLGKDKGPKCVSEDDEVIQVSGVIEAVHDALLQITTRLRNNFF 474
Query: 469 GSTQGSAATRSLSSVRADTSPY 490
SA S S+ SP+
Sbjct: 475 RDAFPSANFPSNSAFLDQHSPF 496
Score = 95.5 bits (236), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 59/184 (32%), Positives = 101/184 (54%), Gaps = 21/184 (11%)
Query: 38 PPSIPTPSGHVAFRILCHSSRIGGVIGKSGAVIKNLQQSTGAKIRVEDAPAESPDRVIMV 97
PP I T FR+LC S +G +IGK G++IK LQQ T ++I+V +A S D +I++
Sbjct: 308 PPEILT------FRLLCPSESVGNLIGKGGSIIKMLQQETASEIKVIEAIPGSEDCIIII 361
Query: 98 IADAALTGRCHIGGEEIEFSKAQEALVKVFDRILEVAEEMGGIEIGDRAVSCRLVADAAQ 157
A R S QEA+ +V +RI ++ + ++ R++ +
Sbjct: 362 SGPAHPDDR---------ISPVQEAIFRVQNRISRAM-----LDSKEHSMLARVIVSSKH 407
Query: 158 AGSVIGKGGTVVEKIKKDTGCKIRVSG-DNMPACTSSSDEVIEIEGSVSSVKKALIAVSR 216
G ++GKGG+++ +++ +G IR+ G D P C S DEVI++ G + +V AL+ ++
Sbjct: 408 IGCLLGKGGSIIAEMRNLSGAHIRMLGKDKGPKCVSEDDEVIQVSGVIEAVHDALLQITT 467
Query: 217 RLQD 220
RL++
Sbjct: 468 RLRN 471
>Medtr6g012630.3 | RNA-binding KH domain protein | HC |
chr6:3864952-3867231 | 20130731
Length = 451
Score = 168 bits (425), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 127/404 (31%), Positives = 206/404 (50%), Gaps = 32/404 (7%)
Query: 49 AFRILCHSSRIGGVIGKSGAVIKNLQQSTGAKIRVEDAPAESPDRVIMVIADAALTGRCH 108
FR LC +IG +IG+ G ++K L+ T AKIR+ + +RV+ V + + T
Sbjct: 48 VFRYLCPGRKIGSIIGRGGEIVKQLRVETKAKIRIGETVPGCDERVVTVYSSSDETNTVD 107
Query: 109 IGGEEIEFSKAQEALVKVFDRILEVAEEMGG--IEIGDRAVSCRLVADAAQAGSVIGKGG 166
G + + S A++AL K+ DR+ VAE++ E G V+ +L+ + Q G V+GKGG
Sbjct: 108 DGDKLV--SPAEDALFKIHDRV--VAEDLHSDQEEEGGPQVNAKLLVPSDQIGCVLGKGG 163
Query: 167 TVVEKIKKDTGCKIRV-SGDNMPACTSSSDEVIEIEGSVSSVKKALIAVSRRLQDCSAAD 225
+V+ ++ +TG +IR+ D++PAC SDE+++I G + VKKAL ++ RL
Sbjct: 164 QIVQNLRSETGAQIRILKDDHVPACALRSDELVQISGDAAVVKKALHQIASRLH------ 217
Query: 226 RIKMVGSKPYEVFQHETLPAVPRETFTDRHMDHHLQRXXXXXXXXXXXXXGVHS-----L 280
P QH AVP + + G +
Sbjct: 218 ------HNPSRT-QHLLGSAVPSVYPSGGSLMGPTAGPPIVGMAPLVGPYGGYKSDTGDW 270
Query: 281 PAEVNRVSPRESKALQQEVTFKIICSNDRXXXXXXXXXXXXRALQSETGATISIGPAVAD 340
P +PR+ + +E + +++C ++ ++GATI + + A
Sbjct: 271 PPRSMYSAPRDEISSSKEFSVRLVCPTGNLGGVIGKGGGIINQIRQDSGATIKVDSS-AK 329
Query: 341 CDDRLISITASENPESRYSPAQKAVVLVFSRSVEAAIEKGIDSGLNKGSSVTARLVVPSN 400
DD LI+I+ E E +SP +A VL+ R E + DSG+ S T RL+V S+
Sbjct: 330 GDDCLITISTKEFFEETFSPTVEAAVLLQPRCSEKSER---DSGI---ISFTTRLLVSSS 383
Query: 401 QVGCLLGKGGVIVSEMRRATGASIRIIGADQVPKCASDNDQVVQ 444
++GCL+GKGG I++EMRR T ++IRI+ + +PK ASD+D++VQ
Sbjct: 384 RIGCLIGKGGSIITEMRRLTKSNIRILSKENLPKIASDDDEMVQ 427
Score = 108 bits (271), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 70/195 (35%), Positives = 104/195 (53%), Gaps = 16/195 (8%)
Query: 290 RESKALQQEVT-FKIICSNDRXXXXXXXXXXXXRALQSETGATISIGPAVADCDDRLISI 348
RE + +E T F+ +C + + L+ ET A I IG V CD+R++++
Sbjct: 37 REQFVINKEDTVFRYLCPGRKIGSIIGRGGEIVKQLRVETKAKIRIGETVPGCDERVVTV 96
Query: 349 TAS-------ENPESRYSPAQKAVVLVFSRSVEAAIEKGIDSGLNKGSSVTARLVVPSNQ 401
+S ++ + SPA+ A+ + R V + D G V A+L+VPS+Q
Sbjct: 97 YSSSDETNTVDDGDKLVSPAEDALFKIHDRVVAEDLHS--DQEEEGGPQVNAKLLVPSDQ 154
Query: 402 VGCLLGKGGVIVSEMRRATGASIRIIGADQVPKCASDNDQVVQISGEFSNVQDALYNATG 461
+GC+LGKGG IV +R TGA IRI+ D VP CA +D++VQISG+ + V+ AL+
Sbjct: 155 IGCVLGKGGQIVQNLRSETGAQIRILKDDHVPACALRSDELVQISGDAAVVKKALHQIAS 214
Query: 462 RLRDN------LLGS 470
RL N LLGS
Sbjct: 215 RLHHNPSRTQHLLGS 229
Score = 50.8 bits (120), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 58/207 (28%), Positives = 103/207 (49%), Gaps = 26/207 (12%)
Query: 2 GSSFFSPPAKRSMLGISDPDPYSPNGSSKRARSSNHPP----SIP----TPSGHVAFRIL 53
G S P A ++G++ P ++ + + PP S P + S + R++
Sbjct: 238 GGSLMGPTAGPPIVGMA---PLVGPYGGYKSDTGDWPPRSMYSAPRDEISSSKEFSVRLV 294
Query: 54 CHSSRIGGVIGKSGAVIKNLQQSTGAKIRVEDAPAESPDRVIMVIADAALTGRCHIGGEE 113
C + +GGVIGK G +I ++Q +GA I+V D+ A+ D +I + E
Sbjct: 295 CPTGNLGGVIGKGGGIINQIRQDSGATIKV-DSSAKGDDCLITISTKEFF---------E 344
Query: 114 IEFSKAQEALVKVFDRILEVAEEMGGIEIGDRAVSCRLVADAAQAGSVIGKGGTVVEKIK 173
FS EA V + R E +E GI + + RL+ +++ G +IGKGG+++ +++
Sbjct: 345 ETFSPTVEAAVLLQPRCSEKSERDSGI----ISFTTRLLVSSSRIGCLIGKGGSIITEMR 400
Query: 174 KDTGCKIRV-SGDNMPACTSSSDEVIE 199
+ T IR+ S +N+P S DE+++
Sbjct: 401 RLTKSNIRILSKENLPKIASDDDEMVQ 427
>Medtr2g019090.2 | RNA-binding KH domain protein | HC |
chr2:6163891-6155394 | 20130731
Length = 628
Score = 147 bits (370), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 124/450 (27%), Positives = 213/450 (47%), Gaps = 50/450 (11%)
Query: 48 VAFRILCHSSRIGGVIGKSGAVIKNLQQSTGAKIRVEDAPAESPDRVIMVIADAALTGRC 107
+A+RILC + IG VIGK+G VI +++Q + AK++V D + RVI + C
Sbjct: 42 IAYRILCPNEVIGSVIGKNGKVINSIRQESRAKVKVVDPFPGAKHRVITIF--------C 93
Query: 108 HIGGE-----------EIEFSKAQEALVKVFDRILEVAEEMGGIEIGDRAV-SCRLVADA 155
H+ + E AQ+AL+KV I E G E + C+++ +
Sbjct: 94 HVKNKEEIEIEDEFDNEKPLCAAQDALIKVHSAISNSIETAGDSEKKRKNKDECQILVPS 153
Query: 156 AQAGSVIGKGGTVVEKIKKDTGCKIRV----SGDNMPACTSSSDEVIEIEGSVSSVKKAL 211
+Q+ +IGK G +++++ T I+V + D +C D + I G +VK+AL
Sbjct: 154 SQSAILIGKAGATIKQLRVKTRTNIKVVPKDAADPEHSCAMEFDNFVLITGESEAVKRAL 213
Query: 212 IAVSRRLQDCSAADRIKM---VGSKPYEVFQHETLPAVPRETFTDRHMDHHLQRXXXXXX 268
AVS + S + I + V P+ + LP P D +Q
Sbjct: 214 FAVSTIMYKFSPKEDIPLDTTVPETPHSIIIPSELPIYPPGGLYPAS-DPIVQPRSFPQL 272
Query: 269 XXXXXXXGVHSLPAEVNRVSPRESKAL----------QQEVTFKIICSNDRXXXXXXXXX 318
+H A+ P S L +E+ +++C +D+
Sbjct: 273 IGATTMQDLHGGYADTGNTWPLYSSPLPVVSSLGASQSEELIVRMLCPSDKIGQLIGKGG 332
Query: 319 XXXRALQSETGATISIGPAVADCDDRLISITASENPESRYSPAQKAVVLVFSRSVEAAIE 378
+ ++ +GA I + + A D+ LI+ITA+E+ S A +AV+L ++
Sbjct: 333 GTIKRMRQASGARIEVDDSKARHDECLITITATESTSDLKSVAVEAVLL---------LQ 383
Query: 379 KGIDSGLNKGSSVTARLVVPSNQVGCLLGKGGVIVSEMRRATGASIRIIGADQVPKCASD 438
+ I+ + V+ RL+VPS +GC++G+ G I++E+R+ T A I+I +++ PK A D
Sbjct: 384 EKIND--EDDAPVSIRLLVPSKVIGCIIGRSGAIINEIRKRTKADIQISRSNK-PKYADD 440
Query: 439 NDQVVQISGEFSNVQDALYNATGRLRDNLL 468
ND++V++ GE V+DAL RLR+++L
Sbjct: 441 NDELVEVVGEVDCVRDALIQIVLRLREDVL 470
Score = 83.6 bits (205), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 96/176 (54%), Gaps = 18/176 (10%)
Query: 45 SGHVAFRILCHSSRIGGVIGKSGAVIKNLQQSTGAKIRVEDAPAESPDRVIMVIADAALT 104
S + R+LC S +IG +IGK G IK ++Q++GA+I V+D+ A + +I + A + +
Sbjct: 310 SEELIVRMLCPSDKIGQLIGKGGGTIKRMRQASGARIEVDDSKARHDECLITITATESTS 369
Query: 105 GRCHIGGEEIEFSKAQEALVKVFDRILEVAEEMGGIEIGDRAVSCRLVADAAQAGSVIGK 164
+ A EA++ + ++I + E+ D VS RL+ + G +IG+
Sbjct: 370 DLKSV---------AVEAVLLLQEKIND--ED-------DAPVSIRLLVPSKVIGCIIGR 411
Query: 165 GGTVVEKIKKDTGCKIRVSGDNMPACTSSSDEVIEIEGSVSSVKKALIAVSRRLQD 220
G ++ +I+K T I++S N P +DE++E+ G V V+ ALI + RL++
Sbjct: 412 SGAIINEIRKRTKADIQISRSNKPKYADDNDELVEVVGEVDCVRDALIQIVLRLRE 467
>Medtr2g019090.1 | RNA-binding KH domain protein | HC |
chr2:6163835-6158039 | 20130731
Length = 631
Score = 140 bits (354), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 123/450 (27%), Positives = 213/450 (47%), Gaps = 51/450 (11%)
Query: 48 VAFRILCHSSRIGGVIGKSGAVIKNLQQSTGAKIRVEDAPAESPDRVIMVIADAALTGRC 107
+A+RILC + IG VIGK+G VI +++Q + AK++V D + RVI + C
Sbjct: 42 IAYRILCPNEVIGSVIGKNGKVINSIRQESRAKVKVVDPFPGAKHRVITIF--------C 93
Query: 108 HIGGE-----------EIEFSKAQEALVKVFDRILEVAEEMGGIEIGDRAV-SCRLVADA 155
H+ + E AQ+AL+KV I E G E + C+++ +
Sbjct: 94 HVKNKEEIEIEDEFDNEKPLCAAQDALIKVHSAISNSIETAGDSEKKRKNKDECQILVPS 153
Query: 156 AQAGSVIGKGGTVVEKIKKDTGCKIRV----SGDNMPACTSSSDEVIEIEGSVSSVKKAL 211
+Q+ +IGK G +++++ T I+V + D +C D + + G +VK+AL
Sbjct: 154 SQSAILIGKAGATIKQLRVKTRTNIKVVPKDAADPEHSCAMEFDNFVLV-GESEAVKRAL 212
Query: 212 IAVSRRLQDCSAADRIKM---VGSKPYEVFQHETLPAVPRETFTDRHMDHHLQRXXXXXX 268
AVS + S + I + V P+ + LP P D +Q
Sbjct: 213 FAVSTIMYKFSPKEDIPLDTTVPETPHSIIIPSELPIYPPGGLYPAS-DPIVQPRSFPQL 271
Query: 269 XXXXXXXGVHSLPAEVNRVSPRESKAL----------QQEVTFKIICSNDRXXXXXXXXX 318
+H A+ P S L +E+ +++C +D+
Sbjct: 272 IGATTMQDLHGGYADTGNTWPLYSSPLPVVSSLGASQSEELIVRMLCPSDKIGQLIGKGG 331
Query: 319 XXXRALQSETGATISIGPAVADCDDRLISITASENPESRYSPAQKAVVLVFSRSVEAAIE 378
+ ++ +GA I + + A D+ LI+ITA+E+ S A +AV+L ++
Sbjct: 332 GTIKRMRQASGARIEVDDSKARHDECLITITATESTSDLKSVAVEAVLL---------LQ 382
Query: 379 KGIDSGLNKGSSVTARLVVPSNQVGCLLGKGGVIVSEMRRATGASIRIIGADQVPKCASD 438
+ I+ + V+ RL+VPS +GC++G+ G I++E+R+ T A I+I +++ PK A D
Sbjct: 383 EKIND--EDDAPVSIRLLVPSKVIGCIIGRSGAIINEIRKRTKADIQISRSNK-PKYADD 439
Query: 439 NDQVVQISGEFSNVQDALYNATGRLRDNLL 468
ND++V++ GE V+DAL RLR+++L
Sbjct: 440 NDELVEVVGEVDCVRDALIQIVLRLREDVL 469
Score = 83.2 bits (204), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 94/176 (53%), Gaps = 18/176 (10%)
Query: 45 SGHVAFRILCHSSRIGGVIGKSGAVIKNLQQSTGAKIRVEDAPAESPDRVIMVIADAALT 104
S + R+LC S +IG +IGK G IK ++Q++GA+I V+D+ A + +I + A + +
Sbjct: 309 SEELIVRMLCPSDKIGQLIGKGGGTIKRMRQASGARIEVDDSKARHDECLITITATESTS 368
Query: 105 GRCHIGGEEIEFSKAQEALVKVFDRILEVAEEMGGIEIGDRAVSCRLVADAAQAGSVIGK 164
+ A EA++ + ++I + D VS RL+ + G +IG+
Sbjct: 369 DLKSV---------AVEAVLLLQEKINDE---------DDAPVSIRLLVPSKVIGCIIGR 410
Query: 165 GGTVVEKIKKDTGCKIRVSGDNMPACTSSSDEVIEIEGSVSSVKKALIAVSRRLQD 220
G ++ +I+K T I++S N P +DE++E+ G V V+ ALI + RL++
Sbjct: 411 SGAIINEIRKRTKADIQISRSNKPKYADDNDELVEVVGEVDCVRDALIQIVLRLRE 466
>Medtr7g006750.1 | pectinacetylesterase family protein | LC |
chr7:1220390-1217478 | 20130731
Length = 816
Score = 115 bits (288), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 62/119 (52%), Positives = 74/119 (62%), Gaps = 1/119 (0%)
Query: 241 ETLPAVPRETFTDRHMDHHLQRXXXXXXXXXXXXXGVHSLPAEVNRVSPRESKALQQEVT 300
ETL VPR+T T+ H+DH LQR GVHSL VN+VS E+KA QQE
Sbjct: 154 ETLTKVPRKTLTNLHVDHLLQRSSTLPSSSNSHATGVHSLSGGVNKVSSLEAKAHQQETA 213
Query: 301 FKIICSNDRXXXXXXXXXXXXRALQSETGATISIGPAVADCDDRLISITASENPESRYS 359
+IIC NDR R QSETG TIS+GP+VA+C+DRLI+ TASE+PE RYS
Sbjct: 214 LRIICCNDRIGGDIGRSGNMIRVPQSETGVTISVGPSVAECEDRLIT-TASESPELRYS 271
>Medtr2g038020.1 | poly(rC)-binding-like protein | HC |
chr2:16509240-16516412 | 20130731
Length = 470
Score = 95.9 bits (237), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 75/237 (31%), Positives = 123/237 (51%), Gaps = 26/237 (10%)
Query: 32 ARSSNHPPS--IPTPSGHVAFRILCHSSRIGGVIGKSGAVIKNLQQSTGAKIRVEDAPAE 89
A ++ PP P G FR++ ++GG+IG+ G +IK L T A++RV DA
Sbjct: 52 AATAVTPPEQRWPGWPGDCVFRLIVPVGKVGGIIGRKGDLIKKLCDETKARVRVLDADLG 111
Query: 90 SPDRVIMVIADAALTGRCHIGGEEIE--FSKAQEALVKVFDRILEVAE---EMGGIEIGD 144
PDR+I++ G EE+E S A +A++++F R+ ++E E G G
Sbjct: 112 IPDRIILI-----------SGKEELEAAISPAMDAVIRIFKRVSGLSETDSENKG-PAGV 159
Query: 145 RAVSCRLVADAAQAGSVIGKGGTVVEKIKKDTGCKIRV-SGDNMPACTSSSDEVIEIEGS 203
S RL+ + QA S+IGK GT++ I++ +G +RV SGD + ++ + +++++G
Sbjct: 160 TLCSIRLLVASTQAISLIGKQGTIIRSIQESSGASVRVLSGDEVQYFATAEERIVDLQGE 219
Query: 204 VSSVKKALIAVSRRLQDCSAADRIKMVGSKPYEVFQHETLPAVPR--ETFTDRHMDH 258
V KAL AV L+ I V K Y + +LP R ET++D+ + H
Sbjct: 220 ALMVLKALEAVIGHLRKFLVDHSILPVYEKTY----NASLPQQDRQAETWSDKPLLH 272
Score = 69.7 bits (169), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/147 (31%), Positives = 75/147 (51%)
Query: 322 RALQSETGATISIGPAVADCDDRLISITASENPESRYSPAQKAVVLVFSRSVEAAIEKGI 381
+ L ET A + + A DR+I I+ E E+ SPA AV+ +F R +
Sbjct: 93 KKLCDETKARVRVLDADLGIPDRIILISGKEELEAAISPAMDAVIRIFKRVSGLSETDSE 152
Query: 382 DSGLNKGSSVTARLVVPSNQVGCLLGKGGVIVSEMRRATGASIRIIGADQVPKCASDNDQ 441
+ G + + RL+V S Q L+GK G I+ ++ ++GAS+R++ D+V A+ ++
Sbjct: 153 NKGPAGVTLCSIRLLVASTQAISLIGKQGTIIRSIQESSGASVRVLSGDEVQYFATAEER 212
Query: 442 VVQISGEFSNVQDALYNATGRLRDNLL 468
+V + GE V AL G LR L+
Sbjct: 213 IVDLQGEALMVLKALEAVIGHLRKFLV 239
>Medtr4g127380.1 | poly(rC)-binding-like protein | HC |
chr4:52864244-52858917 | 20130731
Length = 431
Score = 95.9 bits (237), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 60/183 (32%), Positives = 102/183 (55%), Gaps = 16/183 (8%)
Query: 42 PTPSGHVAFRILCHSSRIGGVIGKSGAVIKNLQQSTGAKIRVEDAPAESPDRVIMVIADA 101
P GH FR++ ++G +IG+ G +IK + T A+IRV DAP +PDR++++
Sbjct: 38 PGWPGHCVFRLIVPVVKVGIIIGRKGELIKKTCEETHARIRVLDAPVGTPDRIVLI---- 93
Query: 102 ALTGRCHIGGEEIE--FSKAQEALVKVFDRI--LEVAEEMGGIEIGDRAVSCRLVADAAQ 157
G E++E S A +A++++F R+ L + G S RL+ + Q
Sbjct: 94 -------SGKEDLEAPLSPAMDAILRIFKRVSGLSETDNNNTAAAGVALCSIRLLVASTQ 146
Query: 158 AGSVIGKGGTVVEKIKKDTGCKIRV-SGDNMPACTSSSDEVIEIEGSVSSVKKALIAVSR 216
A ++IGK G+ ++ I+++TG IRV SGD +P+ + + +I+++G V KAL AV
Sbjct: 147 AINLIGKQGSSIKAIQENTGAVIRVLSGDELPSYAGADERIIDLQGETLKVLKALEAVVG 206
Query: 217 RLQ 219
L+
Sbjct: 207 HLR 209
Score = 66.2 bits (160), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 77/146 (52%), Gaps = 2/146 (1%)
Query: 327 ETGATISIGPAVADCDDRLISITASENPESRYSPAQKAVVLVFSRSVEAAIEKGIDSGLN 386
ET A I + A DR++ I+ E+ E+ SPA A++ +F R V E ++
Sbjct: 72 ETHARIRVLDAPVGTPDRIVLISGKEDLEAPLSPAMDAILRIFKR-VSGLSETDNNNTAA 130
Query: 387 KGSSV-TARLVVPSNQVGCLLGKGGVIVSEMRRATGASIRIIGADQVPKCASDNDQVVQI 445
G ++ + RL+V S Q L+GK G + ++ TGA IR++ D++P A +++++ +
Sbjct: 131 AGVALCSIRLLVASTQAINLIGKQGSSIKAIQENTGAVIRVLSGDELPSYAGADERIIDL 190
Query: 446 SGEFSNVQDALYNATGRLRDNLLGST 471
GE V AL G LR L+ S+
Sbjct: 191 QGETLKVLKALEAVVGHLRKFLVDSS 216
>Medtr7g115340.1 | poly(rC)-binding-like protein | HC |
chr7:47649189-47656173 | 20130731
Length = 510
Score = 83.2 bits (204), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 59/220 (26%), Positives = 106/220 (48%), Gaps = 26/220 (11%)
Query: 42 PTPSGHVAFRILCHSSRIGGVIGKSGAVIKNLQQSTGAKIRVEDAPAESPDRVIMVIADA 101
P G FR+L + ++GG+IG+ G IK + + T A++++ D P + +R +MV A
Sbjct: 109 PGWPGESVFRMLVPAQKVGGIIGRKGEFIKKIVEETRARVKILDGPPGTSERAVMVSAKD 168
Query: 102 ALTGRCHIGGEEIEFSKAQEALVKVFDRILEVAEEMGGIEIGDRAVSCRLVADAAQAGSV 161
A + L+K R+++ + G+ VS + + A+QAGS+
Sbjct: 169 EPGS---------SLPPAVDGLLKAHKRLIDGLDAPSGLA---GKVSTKFLVPASQAGSL 216
Query: 162 IGKGGTVVEKIKKDTGCKIRVSG-DNMPACTSSSDEVIEIEGSVSSVKKALIAVSRRLQD 220
IGK G V+ I++ + C +RV G +++P D V+E+ G V KA+ ++ L+
Sbjct: 217 IGKQGGTVKSIQEASNCIVRVLGAEDLPVFALQDDRVVEVVGDPIGVHKAVEMIASHLKK 276
Query: 221 CSAADR---------IKMVGSKPYEVFQHETLPAVPRETF 251
DR ++M + P E H +P P +++
Sbjct: 277 F-LVDRSIIPIFEMSMQMANNHPVE---HMPVPPPPHQSW 312
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/187 (22%), Positives = 85/187 (45%), Gaps = 6/187 (3%)
Query: 283 EVNRVSP-RESKALQQEVTFKIICSNDRXXXXXXXXXXXXRALQSETGATISIGPAVADC 341
EV V P ++ E F+++ + + + ET A + I
Sbjct: 98 EVPIVEPEKKWPGWPGESVFRMLVPAQKVGGIIGRKGEFIKKIVEETRARVKILDGPPGT 157
Query: 342 DDRLISITASENPESRYSPAQKAVVLVFSRSVEAAIEKGIDSGLNKGSSVTARLVVPSNQ 401
+R + ++A + P S PA ++ R ++ G+D+ V+ + +VP++Q
Sbjct: 158 SERAVMVSAKDEPGSSLPPAVDGLLKAHKRLID-----GLDAPSGLAGKVSTKFLVPASQ 212
Query: 402 VGCLLGKGGVIVSEMRRATGASIRIIGADQVPKCASDNDQVVQISGEFSNVQDALYNATG 461
G L+GK G V ++ A+ +R++GA+ +P A +D+VV++ G+ V A+
Sbjct: 213 AGSLIGKQGGTVKSIQEASNCIVRVLGAEDLPVFALQDDRVVEVVGDPIGVHKAVEMIAS 272
Query: 462 RLRDNLL 468
L+ L+
Sbjct: 273 HLKKFLV 279
>Medtr1g070380.1 | poly(rC)-binding-like protein | HC |
chr1:31149691-31143604 | 20130731
Length = 567
Score = 82.8 bits (203), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 56/178 (31%), Positives = 91/178 (51%), Gaps = 17/178 (9%)
Query: 46 GHVAFRILCHSSRIGGVIGKSGAVIKNLQQSTGAKIRVEDAPAESPDRVIMVIADAALTG 105
G FR+L + ++G +IG+ G IK + + T A++++ D P + +R +MV A
Sbjct: 163 GENVFRMLVPAQKVGSIIGRKGEFIKKITEETRARVKILDGPQGTAERAVMVSAK----- 217
Query: 106 RCHIGGEEIE--FSKAQEALVKVFDRILEVAEEMGGIEIG-DRAVSCRLVADAAQAGSVI 162
EE + A E L++V ++ V E G R RL+ QAGS+I
Sbjct: 218 ------EEPDRPIPPAVEGLLRVHKQVANVVSEPADTAQGAGRPSITRLLVADTQAGSLI 271
Query: 163 GKGGTVVEKIKKDTGCKIRVSG-DNMPACTSSSDEVIEIEGSVSSVKKA--LIAVSRR 217
GK G+ ++ + TGC IR+ G +++P D ++EI+G + V KA LIA+ R
Sbjct: 272 GKQGSTIKIFQDSTGCNIRILGSEHLPIFALRDDSIVEIQGEPAGVHKAVELIALHLR 329
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 78/171 (45%), Gaps = 1/171 (0%)
Query: 298 EVTFKIICSNDRXXXXXXXXXXXXRALQSETGATISIGPAVADCDDRLISITASENPESR 357
E F+++ + + + ET A + I +R + ++A E P+
Sbjct: 164 ENVFRMLVPAQKVGSIIGRKGEFIKKITEETRARVKILDGPQGTAERAVMVSAKEEPDRP 223
Query: 358 YSPAQKAVVLVFSRSVEAAIEKGIDSGLNKGSSVTARLVVPSNQVGCLLGKGGVIVSEMR 417
PA + ++ V + V + + D+ G RL+V Q G L+GK G + +
Sbjct: 224 IPPAVEGLLRVH-KQVANVVSEPADTAQGAGRPSITRLLVADTQAGSLIGKQGSTIKIFQ 282
Query: 418 RATGASIRIIGADQVPKCASDNDQVVQISGEFSNVQDALYNATGRLRDNLL 468
+TG +IRI+G++ +P A +D +V+I GE + V A+ LR L+
Sbjct: 283 DSTGCNIRILGSEHLPIFALRDDSIVEIQGEPAGVHKAVELIALHLRKFLV 333
>Medtr1g070380.3 | poly(rC)-binding-like protein | HC |
chr1:31149687-31143883 | 20130731
Length = 568
Score = 82.4 bits (202), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 56/179 (31%), Positives = 91/179 (50%), Gaps = 18/179 (10%)
Query: 46 GHVAFRILCHSSRIGGVIGKSGAVIKNLQQSTGAKIRVEDAPAESPDRVIMVIADAALTG 105
G FR+L + ++G +IG+ G IK + + T A++++ D P + +R +MV A
Sbjct: 163 GENVFRMLVPAQKVGSIIGRKGEFIKKITEETRARVKILDGPQGTAERAVMVSAK----- 217
Query: 106 RCHIGGEEIE--FSKAQEALVKVFDRILEVAEEMGGIEIG-DRAVSCRLVADAAQAGSVI 162
EE + A E L++V ++ V E G R RL+ QAGS+I
Sbjct: 218 ------EEPDRPIPPAVEGLLRVHKQVANVVSEPADTAQGAGRPSITRLLVADTQAGSLI 271
Query: 163 GKGGTVVEKIKKDTGCKIRVSG--DNMPACTSSSDEVIEIEGSVSSVKKA--LIAVSRR 217
GK G+ ++ + TGC IR+ G +++P D ++EI+G + V KA LIA+ R
Sbjct: 272 GKQGSTIKIFQDSTGCNIRILGSAEHLPIFALRDDSIVEIQGEPAGVHKAVELIALHLR 330
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 78/172 (45%), Gaps = 2/172 (1%)
Query: 298 EVTFKIICSNDRXXXXXXXXXXXXRALQSETGATISIGPAVADCDDRLISITASENPESR 357
E F+++ + + + ET A + I +R + ++A E P+
Sbjct: 164 ENVFRMLVPAQKVGSIIGRKGEFIKKITEETRARVKILDGPQGTAERAVMVSAKEEPDRP 223
Query: 358 YSPAQKAVVLVFSRSVEAAIEKGIDSGLNKGSSVTARLVVPSNQVGCLLGKGGVIVSEMR 417
PA + ++ V + V + + D+ G RL+V Q G L+GK G + +
Sbjct: 224 IPPAVEGLLRVH-KQVANVVSEPADTAQGAGRPSITRLLVADTQAGSLIGKQGSTIKIFQ 282
Query: 418 RATGASIRIIG-ADQVPKCASDNDQVVQISGEFSNVQDALYNATGRLRDNLL 468
+TG +IRI+G A+ +P A +D +V+I GE + V A+ LR L+
Sbjct: 283 DSTGCNIRILGSAEHLPIFALRDDSIVEIQGEPAGVHKAVELIALHLRKFLV 334
>Medtr1g070380.2 | poly(rC)-binding-like protein | HC |
chr1:31149683-31143883 | 20130731
Length = 568
Score = 82.4 bits (202), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 56/179 (31%), Positives = 91/179 (50%), Gaps = 18/179 (10%)
Query: 46 GHVAFRILCHSSRIGGVIGKSGAVIKNLQQSTGAKIRVEDAPAESPDRVIMVIADAALTG 105
G FR+L + ++G +IG+ G IK + + T A++++ D P + +R +MV A
Sbjct: 163 GENVFRMLVPAQKVGSIIGRKGEFIKKITEETRARVKILDGPQGTAERAVMVSAK----- 217
Query: 106 RCHIGGEEIE--FSKAQEALVKVFDRILEVAEEMGGIEIG-DRAVSCRLVADAAQAGSVI 162
EE + A E L++V ++ V E G R RL+ QAGS+I
Sbjct: 218 ------EEPDRPIPPAVEGLLRVHKQVANVVSEPADTAQGAGRPSITRLLVADTQAGSLI 271
Query: 163 GKGGTVVEKIKKDTGCKIRVSG--DNMPACTSSSDEVIEIEGSVSSVKKA--LIAVSRR 217
GK G+ ++ + TGC IR+ G +++P D ++EI+G + V KA LIA+ R
Sbjct: 272 GKQGSTIKIFQDSTGCNIRILGSAEHLPIFALRDDSIVEIQGEPAGVHKAVELIALHLR 330
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 78/172 (45%), Gaps = 2/172 (1%)
Query: 298 EVTFKIICSNDRXXXXXXXXXXXXRALQSETGATISIGPAVADCDDRLISITASENPESR 357
E F+++ + + + ET A + I +R + ++A E P+
Sbjct: 164 ENVFRMLVPAQKVGSIIGRKGEFIKKITEETRARVKILDGPQGTAERAVMVSAKEEPDRP 223
Query: 358 YSPAQKAVVLVFSRSVEAAIEKGIDSGLNKGSSVTARLVVPSNQVGCLLGKGGVIVSEMR 417
PA + ++ V + V + + D+ G RL+V Q G L+GK G + +
Sbjct: 224 IPPAVEGLLRVH-KQVANVVSEPADTAQGAGRPSITRLLVADTQAGSLIGKQGSTIKIFQ 282
Query: 418 RATGASIRIIG-ADQVPKCASDNDQVVQISGEFSNVQDALYNATGRLRDNLL 468
+TG +IRI+G A+ +P A +D +V+I GE + V A+ LR L+
Sbjct: 283 DSTGCNIRILGSAEHLPIFALRDDSIVEIQGEPAGVHKAVELIALHLRKFLV 334
>Medtr7g115340.2 | poly(rC)-binding-like protein | HC |
chr7:47649475-47656173 | 20130731
Length = 442
Score = 81.3 bits (199), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 59/216 (27%), Positives = 107/216 (49%), Gaps = 26/216 (12%)
Query: 46 GHVAFRILCHSSRIGGVIGKSGAVIKNLQQSTGAKIRVEDAPAESPDRVIMVIADAALTG 105
G FR+L + ++GG+IG+ G IK + + T A++++ D P + +R +MV A
Sbjct: 45 GESVFRMLVPAQKVGGIIGRKGEFIKKIVEETRARVKILDGPPGTSERAVMVSA------ 98
Query: 106 RCHIGGEEIEFSKAQEALVKVFDRILEVAEEMGGIEIGDRAVSCRLVADAAQAGSVIGKG 165
+ G A + L+K R+++ + G+ VS + + A+QAGS+IGK
Sbjct: 99 KDEPGS---SLPPAVDGLLKAHKRLIDGLDAPSGLA---GKVSTKFLVPASQAGSLIGKQ 152
Query: 166 GTVVEKIKKDTGCKIRVSG-DNMPACTSSSDEVIEIEGSVSSVKKALIAVSRRLQDCSAA 224
G V+ I++ + C +RV G +++P D V+E+ G V KA+ ++ L+
Sbjct: 153 GGTVKSIQEASNCIVRVLGAEDLPVFALQDDRVVEVVGDPIGVHKAVEMIASHLKKF-LV 211
Query: 225 DR---------IKMVGSKPYEVFQHETLPAVPRETF 251
DR ++M + P E H +P P +++
Sbjct: 212 DRSIIPIFEMSMQMANNHPVE---HMPVPPPPHQSW 244
Score = 61.6 bits (148), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/187 (22%), Positives = 85/187 (45%), Gaps = 6/187 (3%)
Query: 283 EVNRVSP-RESKALQQEVTFKIICSNDRXXXXXXXXXXXXRALQSETGATISIGPAVADC 341
EV V P ++ E F+++ + + + ET A + I
Sbjct: 30 EVPIVEPEKKWPGWPGESVFRMLVPAQKVGGIIGRKGEFIKKIVEETRARVKILDGPPGT 89
Query: 342 DDRLISITASENPESRYSPAQKAVVLVFSRSVEAAIEKGIDSGLNKGSSVTARLVVPSNQ 401
+R + ++A + P S PA ++ R ++ G+D+ V+ + +VP++Q
Sbjct: 90 SERAVMVSAKDEPGSSLPPAVDGLLKAHKRLID-----GLDAPSGLAGKVSTKFLVPASQ 144
Query: 402 VGCLLGKGGVIVSEMRRATGASIRIIGADQVPKCASDNDQVVQISGEFSNVQDALYNATG 461
G L+GK G V ++ A+ +R++GA+ +P A +D+VV++ G+ V A+
Sbjct: 145 AGSLIGKQGGTVKSIQEASNCIVRVLGAEDLPVFALQDDRVVEVVGDPIGVHKAVEMIAS 204
Query: 462 RLRDNLL 468
L+ L+
Sbjct: 205 HLKKFLV 211
>Medtr7g080630.3 | poly(rC)-binding-like protein | HC |
chr7:30700618-30706480 | 20130731
Length = 312
Score = 76.6 bits (187), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 57/180 (31%), Positives = 100/180 (55%), Gaps = 17/180 (9%)
Query: 48 VAFRILCHSSRIGGVIGKSGAVIKNLQQSTGAKIRVEDAPAESPDRVIMVIADAALTGRC 107
V FRI+ S +IG VIGK G I+ +++ T A I++ DA A +RVI++ +
Sbjct: 100 VIFRIVVPSKQIGKVIGKEGCRIQKIREMTRANIKIADAIARHEERVIIISSK------- 152
Query: 108 HIGGEEIEFSKAQEALVKVFDRILE---VAEEMGGIEIGDRAV-SCRLVADAAQAGSVIG 163
+E+ + A++AL ++ + IL+ + + + G A + RL+ +QAG +IG
Sbjct: 153 --DNDEM-VTDAEKALEQIANLILKEDNSSFDASKLTAGHVAANTIRLLIAGSQAGGLIG 209
Query: 164 KGGTVVEKIKKDTGCKIRV-SGDNMPACTSS--SDEVIEIEGSVSSVKKALIAVSRRLQD 220
G +EK++ +G I V + +P C S+ SD V+++ G VS+V KAL + +L++
Sbjct: 210 MSGQNIEKLRNSSGAMITVLAPSQLPLCASAHESDRVVQLSGDVSTVMKALEEIGCQLRE 269
Score = 72.4 bits (176), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 96/178 (53%), Gaps = 5/178 (2%)
Query: 293 KALQQEVTFKIICSNDRXXXXXXXXXXXXRALQSETGATISIGPAVADCDDRLISITASE 352
+A Q+V F+I+ + + + ++ T A I I A+A ++R+I I++ +
Sbjct: 94 RAKGQDVIFRIVVPSKQIGKVIGKEGCRIQKIREMTRANIKIADAIARHEERVIIISSKD 153
Query: 353 NPESRYSPAQKAVVLVFSRSVEAAIEKGIDSGLNKG--SSVTARLVVPSNQVGCLLGKGG 410
N E + A+KA+ + + ++ S L G ++ T RL++ +Q G L+G G
Sbjct: 154 NDE-MVTDAEKALEQIANLILKEDNSSFDASKLTAGHVAANTIRLLIAGSQAGGLIGMSG 212
Query: 411 VIVSEMRRATGASIRIIGADQVPKCAS--DNDQVVQISGEFSNVQDALYNATGRLRDN 466
+ ++R ++GA I ++ Q+P CAS ++D+VVQ+SG+ S V AL +LR+N
Sbjct: 213 QNIEKLRNSSGAMITVLAPSQLPLCASAHESDRVVQLSGDVSTVMKALEEIGCQLREN 270
>Medtr7g080630.5 | poly(rC)-binding-like protein | HC |
chr7:30700621-30706773 | 20130731
Length = 306
Score = 76.6 bits (187), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 57/180 (31%), Positives = 100/180 (55%), Gaps = 17/180 (9%)
Query: 48 VAFRILCHSSRIGGVIGKSGAVIKNLQQSTGAKIRVEDAPAESPDRVIMVIADAALTGRC 107
V FRI+ S +IG VIGK G I+ +++ T A I++ DA A +RVI++ +
Sbjct: 100 VIFRIVVPSKQIGKVIGKEGCRIQKIREMTRANIKIADAIARHEERVIIISSK------- 152
Query: 108 HIGGEEIEFSKAQEALVKVFDRILE---VAEEMGGIEIGDRAV-SCRLVADAAQAGSVIG 163
+E+ + A++AL ++ + IL+ + + + G A + RL+ +QAG +IG
Sbjct: 153 --DNDEM-VTDAEKALEQIANLILKEDNSSFDASKLTAGHVAANTIRLLIAGSQAGGLIG 209
Query: 164 KGGTVVEKIKKDTGCKIRV-SGDNMPACTSS--SDEVIEIEGSVSSVKKALIAVSRRLQD 220
G +EK++ +G I V + +P C S+ SD V+++ G VS+V KAL + +L++
Sbjct: 210 MSGQNIEKLRNSSGAMITVLAPSQLPLCASAHESDRVVQLSGDVSTVMKALEEIGCQLRE 269
Score = 72.4 bits (176), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 96/178 (53%), Gaps = 5/178 (2%)
Query: 293 KALQQEVTFKIICSNDRXXXXXXXXXXXXRALQSETGATISIGPAVADCDDRLISITASE 352
+A Q+V F+I+ + + + ++ T A I I A+A ++R+I I++ +
Sbjct: 94 RAKGQDVIFRIVVPSKQIGKVIGKEGCRIQKIREMTRANIKIADAIARHEERVIIISSKD 153
Query: 353 NPESRYSPAQKAVVLVFSRSVEAAIEKGIDSGLNKG--SSVTARLVVPSNQVGCLLGKGG 410
N E + A+KA+ + + ++ S L G ++ T RL++ +Q G L+G G
Sbjct: 154 NDE-MVTDAEKALEQIANLILKEDNSSFDASKLTAGHVAANTIRLLIAGSQAGGLIGMSG 212
Query: 411 VIVSEMRRATGASIRIIGADQVPKCAS--DNDQVVQISGEFSNVQDALYNATGRLRDN 466
+ ++R ++GA I ++ Q+P CAS ++D+VVQ+SG+ S V AL +LR+N
Sbjct: 213 QNIEKLRNSSGAMITVLAPSQLPLCASAHESDRVVQLSGDVSTVMKALEEIGCQLREN 270
>Medtr7g080630.4 | poly(rC)-binding-like protein | HC |
chr7:30700618-30707328 | 20130731
Length = 379
Score = 74.7 bits (182), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 57/182 (31%), Positives = 100/182 (54%), Gaps = 21/182 (11%)
Query: 48 VAFRILCHSSRIGGVIGKSGAVIKNLQQSTGAKIRVEDAPAESPDRVIMVIADAALTGRC 107
V FRI+ S +IG VIGK G I+ +++ T A I++ DA A +RVI++ +
Sbjct: 100 VIFRIVVPSKQIGKVIGKEGCRIQKIREMTRANIKIADAIARHEERVIIISSK------- 152
Query: 108 HIGGEEIEFSKAQEALVKVFDRILEV------AEEMGGIEIGDRAVSCRLVADAAQAGSV 161
+E+ + A++AL ++ + IL+ A ++ + A + RL+ +QAG +
Sbjct: 153 --DNDEM-VTDAEKALEQIANLILKEDNSSFDASKLTAGHVA--ANTIRLLIAGSQAGGL 207
Query: 162 IGKGGTVVEKIKKDTGCKIRV-SGDNMPACTSS--SDEVIEIEGSVSSVKKALIAVSRRL 218
IG G +EK++ +G I V + +P C S+ SD V+++ G VS+V KAL + +L
Sbjct: 208 IGMSGQNIEKLRNSSGAMITVLAPSQLPLCASAHESDRVVQLSGDVSTVMKALEEIGCQL 267
Query: 219 QD 220
++
Sbjct: 268 RE 269
Score = 71.6 bits (174), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 96/178 (53%), Gaps = 5/178 (2%)
Query: 293 KALQQEVTFKIICSNDRXXXXXXXXXXXXRALQSETGATISIGPAVADCDDRLISITASE 352
+A Q+V F+I+ + + + ++ T A I I A+A ++R+I I++ +
Sbjct: 94 RAKGQDVIFRIVVPSKQIGKVIGKEGCRIQKIREMTRANIKIADAIARHEERVIIISSKD 153
Query: 353 NPESRYSPAQKAVVLVFSRSVEAAIEKGIDSGLNKG--SSVTARLVVPSNQVGCLLGKGG 410
N E + A+KA+ + + ++ S L G ++ T RL++ +Q G L+G G
Sbjct: 154 NDE-MVTDAEKALEQIANLILKEDNSSFDASKLTAGHVAANTIRLLIAGSQAGGLIGMSG 212
Query: 411 VIVSEMRRATGASIRIIGADQVPKCAS--DNDQVVQISGEFSNVQDALYNATGRLRDN 466
+ ++R ++GA I ++ Q+P CAS ++D+VVQ+SG+ S V AL +LR+N
Sbjct: 213 QNIEKLRNSSGAMITVLAPSQLPLCASAHESDRVVQLSGDVSTVMKALEEIGCQLREN 270
>Medtr7g080630.1 | poly(rC)-binding-like protein | HC |
chr7:30700618-30706480 | 20130731
Length = 379
Score = 74.7 bits (182), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 57/182 (31%), Positives = 100/182 (54%), Gaps = 21/182 (11%)
Query: 48 VAFRILCHSSRIGGVIGKSGAVIKNLQQSTGAKIRVEDAPAESPDRVIMVIADAALTGRC 107
V FRI+ S +IG VIGK G I+ +++ T A I++ DA A +RVI++ +
Sbjct: 100 VIFRIVVPSKQIGKVIGKEGCRIQKIREMTRANIKIADAIARHEERVIIISSK------- 152
Query: 108 HIGGEEIEFSKAQEALVKVFDRILEV------AEEMGGIEIGDRAVSCRLVADAAQAGSV 161
+E+ + A++AL ++ + IL+ A ++ + A + RL+ +QAG +
Sbjct: 153 --DNDEM-VTDAEKALEQIANLILKEDNSSFDASKLTAGHVA--ANTIRLLIAGSQAGGL 207
Query: 162 IGKGGTVVEKIKKDTGCKIRV-SGDNMPACTSS--SDEVIEIEGSVSSVKKALIAVSRRL 218
IG G +EK++ +G I V + +P C S+ SD V+++ G VS+V KAL + +L
Sbjct: 208 IGMSGQNIEKLRNSSGAMITVLAPSQLPLCASAHESDRVVQLSGDVSTVMKALEEIGCQL 267
Query: 219 QD 220
++
Sbjct: 268 RE 269
Score = 71.6 bits (174), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 96/178 (53%), Gaps = 5/178 (2%)
Query: 293 KALQQEVTFKIICSNDRXXXXXXXXXXXXRALQSETGATISIGPAVADCDDRLISITASE 352
+A Q+V F+I+ + + + ++ T A I I A+A ++R+I I++ +
Sbjct: 94 RAKGQDVIFRIVVPSKQIGKVIGKEGCRIQKIREMTRANIKIADAIARHEERVIIISSKD 153
Query: 353 NPESRYSPAQKAVVLVFSRSVEAAIEKGIDSGLNKG--SSVTARLVVPSNQVGCLLGKGG 410
N E + A+KA+ + + ++ S L G ++ T RL++ +Q G L+G G
Sbjct: 154 NDE-MVTDAEKALEQIANLILKEDNSSFDASKLTAGHVAANTIRLLIAGSQAGGLIGMSG 212
Query: 411 VIVSEMRRATGASIRIIGADQVPKCAS--DNDQVVQISGEFSNVQDALYNATGRLRDN 466
+ ++R ++GA I ++ Q+P CAS ++D+VVQ+SG+ S V AL +LR+N
Sbjct: 213 QNIEKLRNSSGAMITVLAPSQLPLCASAHESDRVVQLSGDVSTVMKALEEIGCQLREN 270
>Medtr7g080630.2 | poly(rC)-binding-like protein | HC |
chr7:30700618-30707393 | 20130731
Length = 379
Score = 74.7 bits (182), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 57/182 (31%), Positives = 100/182 (54%), Gaps = 21/182 (11%)
Query: 48 VAFRILCHSSRIGGVIGKSGAVIKNLQQSTGAKIRVEDAPAESPDRVIMVIADAALTGRC 107
V FRI+ S +IG VIGK G I+ +++ T A I++ DA A +RVI++ +
Sbjct: 100 VIFRIVVPSKQIGKVIGKEGCRIQKIREMTRANIKIADAIARHEERVIIISSK------- 152
Query: 108 HIGGEEIEFSKAQEALVKVFDRILEV------AEEMGGIEIGDRAVSCRLVADAAQAGSV 161
+E+ + A++AL ++ + IL+ A ++ + A + RL+ +QAG +
Sbjct: 153 --DNDEM-VTDAEKALEQIANLILKEDNSSFDASKLTAGHVA--ANTIRLLIAGSQAGGL 207
Query: 162 IGKGGTVVEKIKKDTGCKIRV-SGDNMPACTSS--SDEVIEIEGSVSSVKKALIAVSRRL 218
IG G +EK++ +G I V + +P C S+ SD V+++ G VS+V KAL + +L
Sbjct: 208 IGMSGQNIEKLRNSSGAMITVLAPSQLPLCASAHESDRVVQLSGDVSTVMKALEEIGCQL 267
Query: 219 QD 220
++
Sbjct: 268 RE 269
Score = 71.6 bits (174), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 96/178 (53%), Gaps = 5/178 (2%)
Query: 293 KALQQEVTFKIICSNDRXXXXXXXXXXXXRALQSETGATISIGPAVADCDDRLISITASE 352
+A Q+V F+I+ + + + ++ T A I I A+A ++R+I I++ +
Sbjct: 94 RAKGQDVIFRIVVPSKQIGKVIGKEGCRIQKIREMTRANIKIADAIARHEERVIIISSKD 153
Query: 353 NPESRYSPAQKAVVLVFSRSVEAAIEKGIDSGLNKG--SSVTARLVVPSNQVGCLLGKGG 410
N E + A+KA+ + + ++ S L G ++ T RL++ +Q G L+G G
Sbjct: 154 NDE-MVTDAEKALEQIANLILKEDNSSFDASKLTAGHVAANTIRLLIAGSQAGGLIGMSG 212
Query: 411 VIVSEMRRATGASIRIIGADQVPKCAS--DNDQVVQISGEFSNVQDALYNATGRLRDN 466
+ ++R ++GA I ++ Q+P CAS ++D+VVQ+SG+ S V AL +LR+N
Sbjct: 213 QNIEKLRNSSGAMITVLAPSQLPLCASAHESDRVVQLSGDVSTVMKALEEIGCQLREN 270
>Medtr7g082290.1 | KH domain protein | HC | chr7:31538792-31537882 |
20130731
Length = 188
Score = 67.4 bits (163), Expect = 5e-11, Method: Composition-based stats.
Identities = 29/59 (49%), Positives = 45/59 (76%)
Query: 388 GSSVTARLVVPSNQVGCLLGKGGVIVSEMRRATGASIRIIGADQVPKCASDNDQVVQIS 446
G S+ ++V +N +GCL+GKGG I++EMRR T ++IRI+ + +PK ASD+D++VQ S
Sbjct: 27 GHSMGKAVIVAANMIGCLIGKGGSIITEMRRLTRSNIRILSKENLPKIASDDDEMVQGS 85
>Medtr1g016760.1 | RNA-binding KH domain protein | HC |
chr1:4457792-4464676 | 20130731
Length = 627
Score = 63.2 bits (152), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 55/197 (27%), Positives = 94/197 (47%), Gaps = 33/197 (16%)
Query: 51 RILCHSSRIGGVIGKSGAVIKNLQQSTGAKIRVE---DAPAESPDRVIMVIADAALTGRC 107
+I + R+G +IGK G IK LQ +GAKI+V DA SP+R++ LTG
Sbjct: 115 KIEIPNGRVGVIIGKGGETIKYLQLQSGAKIQVTRDMDADPNSPNRLVE------LTGT- 167
Query: 108 HIGGEEIEFSKAQEALVKVFDRILEVAEEMGGIEIGDRAVSCRLVADA-------AQAGS 160
S A K+ +L AE GG + R ++ + AD + G
Sbjct: 168 ---------SDAIATAEKLIKEVLAEAES-GGNGLVTRRMTGQGGADEFSMKIPNNKVGL 217
Query: 161 VIGKGGTVVEKIKKDTGCKIRVSGDNMPACTSSSDEVIEIEGSVSSVKKA------LIAV 214
+IGKGG ++ ++ TG +I+V ++P +S++ ++IEG+ ++ A +++
Sbjct: 218 IIGKGGETIKSMQATTGARIQVIPLHLPPGDTSTERTLKIEGTSEQIESAKQLVDSILSG 277
Query: 215 SRRLQDCSAADRIKMVG 231
RL++ S + G
Sbjct: 278 ENRLRNPSMSGGYSQQG 294
>Medtr3g104280.1 | RNA-binding KH domain protein | HC |
chr3:48040831-48036380 | 20130731
Length = 605
Score = 53.9 bits (128), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 51/195 (26%), Positives = 93/195 (47%), Gaps = 38/195 (19%)
Query: 51 RILCHSSRIGGVIGKSGAVIKNLQQSTGAKIRVE---DAPAESPDRVIMVIADAALTGRC 107
+I + R+G +IGK G IK LQ +GAKI+V DA S R++ ++
Sbjct: 89 KIEIPNGRVGVLIGKGGETIKYLQMQSGAKIQVTRDMDADPNSQTRMVELM--------- 139
Query: 108 HIGGEEIEFSKAQEALVKVFDRILEVAEEMGGIEIGDRAVSCRLVADAA----------- 156
G S A+ K+ + +L AE G +G + R+VA +
Sbjct: 140 ---GTPDAVSSAE----KLINEVLAEAEA--GASVGG---TRRMVAQSGGDEFVMQIPNN 187
Query: 157 QAGSVIGKGGTVVEKIKKDTGCKIRVSGDNMPACTSSSDEVIEIEGSVSSVKKALIAVSR 216
+ G +IGKGG ++ ++ TG +I+V + P +S++ ++I+G+ ++ A V++
Sbjct: 188 KVGLIIGKGGETIKGMQASTGARIQVIPLHPPPGDTSTERTLKIDGTPDQIESAKQLVNQ 247
Query: 217 RLQDCSAADRIKMVG 231
L + +R++ G
Sbjct: 248 IL---TGENRLRNSG 259
>Medtr3g104270.1 | RNA-binding KH domain protein | HC |
chr3:48031833-48027169 | 20130731
Length = 605
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 93/196 (47%), Gaps = 38/196 (19%)
Query: 51 RILCHSSRIGGVIGKSGAVIKNLQQSTGAKIRVE---DAPAESPDRVIMVIADAALTGRC 107
+I + R+G +IGK G IK LQ +GAKI+V DA S R++ ++
Sbjct: 89 KIEIPNGRVGVLIGKGGETIKYLQMQSGAKIQVTRDMDADPNSQTRMVELM--------- 139
Query: 108 HIGGEEIEFSKAQEALVKVFDRILEVAEEMGGIEIGDRAVSCRLVADAA----------- 156
G S A+ K+ + +L AE G G R R+VA +
Sbjct: 140 ---GTPDAVSSAE----KLINEVLAEAE-AGASGGGTR----RMVAQSGGDEFVMQIPNN 187
Query: 157 QAGSVIGKGGTVVEKIKKDTGCKIRVSGDNMPACTSSSDEVIEIEGSVSSVKKALIAVSR 216
+ G +IGKGG ++ ++ TG +I+V + P +S++ ++I+G+ ++ A V++
Sbjct: 188 KVGLIIGKGGETIKSMQASTGARIQVIPLHPPPGDTSTERTLKIDGTPDQIESAKQLVNQ 247
Query: 217 RLQDCSAADRIKMVGS 232
L + +R++ G+
Sbjct: 248 IL---TGENRLRNSGN 260
>Medtr5g049770.1 | RNA-binding KH domain protein | HC |
chr5:21769759-21766560 | 20130731
Length = 241
Score = 51.2 bits (121), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 47/70 (67%), Gaps = 3/70 (4%)
Query: 399 SNQVGCLLGKGGVIVSEMRRATGASIRIIGADQVPKCASDNDQVVQISGEFSNVQDALYN 458
S+QVG ++GKGG +S +R +G++IR+ A P CA+ +++++ I+G + +++AL
Sbjct: 28 SSQVGAIVGKGGKNISNIRNNSGSNIRVCPA---PHCAAKDEELILITGGYRCIENALRK 84
Query: 459 ATGRLRDNLL 468
T +R+N L
Sbjct: 85 ITSIIRNNPL 94