Miyakogusa Predicted Gene
- Lj6g3v2193420.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj6g3v2193420.1 tr|D7KHT7|D7KHT7_ARALL KH domain-containing
protein OS=Arabidopsis lyrata subsp. lyrata
GN=ARALYDRAF,32.09,3e-18,KH_1,K Homology domain, type 1; Eukaryotic
type KH-domain (KH-domain type I),NULL; KH_TYPE_1,K Homol,CUFF.60864.1
(699 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G51580.1 | Symbols: | RNA-binding KH domain-containing prote... 228 1e-59
AT5G09560.1 | Symbols: | RNA-binding KH domain-containing prote... 226 5e-59
AT2G22600.1 | Symbols: | RNA-binding KH domain-containing prote... 213 5e-55
AT5G15270.1 | Symbols: | RNA-binding KH domain-containing prote... 210 2e-54
AT5G15270.2 | Symbols: | RNA-binding KH domain-containing prote... 210 2e-54
AT5G64390.3 | Symbols: HEN4 | RNA-binding KH domain-containing p... 201 1e-51
AT5G64390.2 | Symbols: HEN4 | RNA-binding KH domain-containing p... 201 1e-51
AT5G64390.1 | Symbols: HEN4 | RNA-binding KH domain-containing p... 201 1e-51
AT5G53060.1 | Symbols: | RNA-binding KH domain-containing prote... 196 4e-50
AT5G46190.1 | Symbols: | RNA-binding KH domain-containing prote... 159 8e-39
AT1G14170.3 | Symbols: | RNA-binding KH domain-containing prote... 158 1e-38
AT1G14170.2 | Symbols: | RNA-binding KH domain-containing prote... 150 3e-36
AT1G14170.1 | Symbols: | RNA-binding KH domain-containing prote... 150 3e-36
AT4G18375.1 | Symbols: | RNA-binding KH domain-containing prote... 135 7e-32
AT4G18375.2 | Symbols: | RNA-binding KH domain-containing prote... 135 1e-31
AT3G04610.1 | Symbols: FLK | RNA-binding KH domain-containing pr... 91 4e-18
AT4G26000.1 | Symbols: PEP | RNA-binding KH domain-containing pr... 81 3e-15
AT5G53060.2 | Symbols: | RNA-binding KH domain-containing prote... 72 1e-12
AT2G03110.1 | Symbols: | RNA binding;nucleic acid binding | chr... 63 7e-10
>AT1G51580.1 | Symbols: | RNA-binding KH domain-containing protein
| chr1:19125612-19128102 FORWARD LENGTH=621
Length = 621
Score = 228 bits (581), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 163/467 (34%), Positives = 245/467 (52%), Gaps = 66/467 (14%)
Query: 34 SSNHPPSIPTPSGHVAFRILCHSSRIGGVIGKSGAVIKNLQQSTGAKIRV-EDAPAESPD 92
+S P + T + V FR+LC ++R G +IGK G+VI++LQ TG+KIRV +D P S +
Sbjct: 5 TSKRPATTATAAESVHFRLLCPATRTGAIIGKGGSVIRHLQSVTGSKIRVIDDIPVPSEE 64
Query: 93 RVIMVIA------------DAALTG----------RCH--IGGEEIEF-SKAQEALVKVF 127
RV+++IA D+ G C GG++ E S AQ AL++VF
Sbjct: 65 RVVLIIAPSGKKKDESNVCDSENPGSEEPKQEKGSECAGTSGGDDEEAPSSAQMALLRVF 124
Query: 128 DRIL--EVAEEMGGIEI--GDRAVSCRLVADAAQAGSVIGKGGTVVEKIKKDTGCKIRVS 183
+RI+ + A + G E+ G+ CR++ Q ++ KGG +++KI++D+G +R+S
Sbjct: 125 ERIVFGDDAATVDGDELDKGESEGLCRMIVRGNQVDYLMSKGGKMIQKIREDSGAIVRIS 184
Query: 184 G-DNMPACTSSSDEVIEIEGSVSSVKKALIAVSRRLQDCSAADRIKMVGSKPYEVFQHET 242
D +P C D VI++ G SSVKKAL+ V+ LQ+ A P+
Sbjct: 185 STDQIPPCAFPGDVVIQMNGKFSSVKKALLLVTNCLQESGAPPTWDEC---PF------P 235
Query: 243 LPAVPRETFTDRHMDHHLQRXXXXXXXXXXXXXGVHSLPAEV-NRVSPRESKALQQEVTF 301
P P E + M++H Q H P + V P +++EV F
Sbjct: 236 QPGYPPEYHS---MEYHPQWD--------------HPPPNPMPEDVGPFNRPVVEEEVAF 278
Query: 302 KIICSNDRXXXXXXXXXXXXRALQSETGATISIGPAVADCDDRLISITASENPESRYSPA 361
+++C D+ RALQ+E+GA+I + D ++R+I I+A EN E R+S A
Sbjct: 279 RLLCPADKVGSLIGKGGAVVRALQNESGASIKVSDPTHDSEERIIVISARENLERRHSLA 338
Query: 362 QKAVVLVFSRSVEAAIEKGIDSGLNKGSSVTARLVVPSNQVGCLLGKGGVIVSEMRRATG 421
Q V+ V +R VE G ++V ARL+V S +G LLGKGG ++SEMRRATG
Sbjct: 339 QDGVMRVHNRIVEI--------GFEPSAAVVARLLVHSPYIGRLLGKGGHLISEMRRATG 390
Query: 422 ASIRIIGADQVPKCASDNDQVVQISGEFSNVQDALYNATGRLRDNLL 468
ASIR+ DQ K S +D++VQ+ G VQDAL+ RLR+ +
Sbjct: 391 ASIRVFAKDQATKYESQHDEIVQVIGNLKTVQDALFQILCRLREAMF 437
Score = 102 bits (253), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 64/204 (31%), Positives = 109/204 (53%), Gaps = 27/204 (13%)
Query: 36 NHPPSIPTPSG-----------HVAFRILCHSSRIGGVIGKSGAVIKNLQQSTGAKIRVE 84
+HPP P P VAFR+LC + ++G +IGK GAV++ LQ +GA I+V
Sbjct: 253 DHPPPNPMPEDVGPFNRPVVEEEVAFRLLCPADKVGSLIGKGGAVVRALQNESGASIKVS 312
Query: 85 DAPAESPDRVIMVIADAALTGRCHIGGEEIEFSKAQEALVKVFDRILEVAEEMGGIEIGD 144
D +S +R+I++ A L R S AQ+ +++V +RI+E+ E
Sbjct: 313 DPTHDSEERIIVISARENLERR---------HSLAQDGVMRVHNRIVEIGFEPSA----- 358
Query: 145 RAVSCRLVADAAQAGSVIGKGGTVVEKIKKDTGCKIRV-SGDNMPACTSSSDEVIEIEGS 203
AV RL+ + G ++GKGG ++ ++++ TG IRV + D S DE++++ G+
Sbjct: 359 -AVVARLLVHSPYIGRLLGKGGHLISEMRRATGASIRVFAKDQATKYESQHDEIVQVIGN 417
Query: 204 VSSVKKALIAVSRRLQDCSAADRI 227
+ +V+ AL + RL++ R+
Sbjct: 418 LKTVQDALFQILCRLREAMFPGRL 441
>AT5G09560.1 | Symbols: | RNA-binding KH domain-containing protein
| chr5:2967170-2969655 FORWARD LENGTH=612
Length = 612
Score = 226 bits (575), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 160/467 (34%), Positives = 248/467 (53%), Gaps = 63/467 (13%)
Query: 47 HVAFRILCHSSRIGGVIGKSGAVIKNLQQSTGAKIRVEDAPAE-SPDRVIMVIADAALTG 105
+V FRILC+ S+ G VIGK G ++K L +ST + I VE P + SP R+I +
Sbjct: 29 YVTFRILCNVSQAGHVIGKHGGMVKKLHKSTESSIWVEKTPLDDSPYRIIKIFGHVGSVS 88
Query: 106 RCHIG--------------GEEIEFSKAQEALVKVFDRILEVAEEMGGIEIGD---RAVS 148
R +G +E+E S+AQ AL++VF+ + GD VS
Sbjct: 89 RVKLGVIVNNVSNREKKEQEQEVEVSRAQYALIRVFE----------ALNFGDCTSSTVS 138
Query: 149 CRLVADAAQAGSVIGKGGTVVEKIKKDTGCKIRVSGDNMPACTSSSDEVIEIEGS-VSSV 207
C L+ + + +VIGK G ++++I ++TGC +++ ++ CT+ D V++IEG+ +S+V
Sbjct: 139 CNLLMEGSHVVTVIGKNGELMQRILEETGCNVQLRSHDLSICTNPGDVVLKIEGNRLSAV 198
Query: 208 KKALIAVSRRLQDCSA-------ADRIKMVGSKPYEVFQHETLPAVPRETFTDRHMDHHL 260
KAL+++S RLQ C A+ + +P E + P + RH++
Sbjct: 199 MKALVSISSRLQACPPISTASLHAEAVPDALRRPMEYRSQQYREVDPHGSL-HRHVEISQ 257
Query: 261 QRXXXXXXXXXXXXXGVHSLP--AEVNRVSPRESKA--------LQ------QEVTFKII 304
+ + LP + +R+ SK LQ ++V KI+
Sbjct: 258 EDALVRPFFRTITQPRIDYLPHPSYDHRLITSASKNPPVTIKQPLQASKDDIRQVDLKIL 317
Query: 305 CSNDRXXXXXXXXXXXXRALQSETGATISIGPAVADCDDRLISITASENPESRYSPAQKA 364
CSN+ +S T A+IS+G DCD+RL++ITA E + S +Q+A
Sbjct: 318 CSNESASVVIKT--------RSVTDASISVGDRHPDCDERLVTITAFEKTKDITSESQRA 369
Query: 365 VVLVFSRSVEAAIEKGIDSGLNKGSSVTARLVVPSNQVGCLLGKGGVIVSEMRRATGASI 424
+VLVFS E A K +DSGL SS+TARLVV SNQ+ CLLG+ G I + +++ TGA I
Sbjct: 370 LVLVFSNMYENATAKVLDSGLT--SSITARLVVRSNQINCLLGEEGRIKTTIQQRTGAFI 427
Query: 425 RIIGADQVPKCASDNDQVVQISGEFSNVQDALYNATGRLRDNLLGST 471
++ +Q PKC S+N+QVVQISGEF NV++A+ T LR++L+ +
Sbjct: 428 TVLNVEQNPKCVSENNQVVQISGEFPNVREAINQVTSMLREDLINQS 474
>AT2G22600.1 | Symbols: | RNA-binding KH domain-containing protein
| chr2:9596617-9599050 FORWARD LENGTH=632
Length = 632
Score = 213 bits (541), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 159/462 (34%), Positives = 240/462 (51%), Gaps = 46/462 (9%)
Query: 49 AFRILCHSSRIGGVIGKSGAVIKNLQQSTGAKIRVEDAPAESPDRVIMVIADAA------ 102
A R++CH+S IGG+IG +G V+ L++ TG KI E S V+ ++ A
Sbjct: 26 AIRVVCHASVIGGIIGSNGYVVSKLRRETGTKIHCESPVNGSDHWVVFIVGSTAVNQSIL 85
Query: 103 LTGRC--HIGGEE-----IEFSKAQEALVKVFDR--ILEVAEEMGGIEIG-DRAVSCRLV 152
LT R GGE E S AQ AL++V +R ++ A++ GG+ G D C ++
Sbjct: 86 LTDRVGEFSGGEHEDWVTCEVSAAQTALIRVLERSWVVLAAKDGGGVVDGEDEEAYCGIL 145
Query: 153 ADAAQAGSVIGKGGTVVEKIKKDTGCKIRVSGDNMPACTSSSDEVIEIEGSVSSVKKALI 212
AD Q G+V+G GG VE +++++G IRV P C + +DE+I+I G V +VKKAL+
Sbjct: 146 ADRNQIGAVLGLGGKNVEWMRRNSGAMIRVLPP--PICGTKNDELIQITGDVLAVKKALV 203
Query: 213 AVSRRLQDCSAADRIKM-VGSKPYEVFQHETLPAVPRETFTDRHMDHHLQRXXXXXXXXX 271
VS +Q+ + + + K YE + P F L
Sbjct: 204 MVSSYIQNNAPLNGYPPPLSIKGYESLSTDGNSEDPHSEFFPNLRSSSLSNATEIVAS-- 261
Query: 272 XXXXGVHSLPAEVNRVSPRES-KALQQEVTFKIICSNDRXXXXXXXXXXXXRALQSETGA 330
NR P + + +++V FKII ++ RALQ+ETGA
Sbjct: 262 -------------NRHLPYDGGNSTERKVVFKIIFTSVVAGGIIGKQGTIIRALQNETGA 308
Query: 331 TISIGPAVADCDDRLISITASENPESRYSPAQKAVVLVFSRSVEAAIEKGIDSGLNKGSS 390
+IS+G + +R+++++A EN ESRYS AQ A+ LVF+RSVE +EKG+ GL+ G+
Sbjct: 309 SISVGAPLKVSGERVVTVSARENLESRYSHAQNALALVFARSVEIDVEKGLRPGLHNGAI 368
Query: 391 VTARLVVPSNQVGCLLGKGGVIVSEMRRATGASIRIIGADQVPKCASDNDQVVQISGEFS 450
V +L+VPS+ G G E ATGA + I +QV + S+N+ V++I GE+S
Sbjct: 369 VKTKLLVPSHFANSFNGNGN---REAIIATGADVHISVGNQVLEWISENEVVIEIKGEYS 425
Query: 451 NVQDALYNATGRLRDNLLGSTQGSAATRSLSSVRADTS-PYE 491
+VQ AL + + +LR+NLL + L +RA S PYE
Sbjct: 426 HVQKALTHVSSKLRENLL-------PKKVLGEMRARVSNPYE 460
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 64/177 (36%), Positives = 89/177 (50%), Gaps = 17/177 (9%)
Query: 48 VAFRILCHSSRIGGVIGKSGAVIKNLQQSTGAKIRVEDAPAESPDRVIMVIADAALTGRC 107
V F+I+ S GG+IGK G +I+ LQ TGA I V S +RV+ V A L R
Sbjct: 277 VVFKIIFTSVVAGGIIGKQGTIIRALQNETGASISVGAPLKVSGERVVTVSARENLESR- 335
Query: 108 HIGGEEIEFSKAQEALVKVFDRILEVAEEMG---GIEIGDRAVSCRLVADAAQAGSVIGK 164
+S AQ AL VF R +E+ E G G+ G V +L+ + A S G
Sbjct: 336 --------YSHAQNALALVFARSVEIDVEKGLRPGLHNG-AIVKTKLLVPSHFANSFNGN 386
Query: 165 GGTVVEKIKKDTGCKIRVS-GDNMPACTSSSDEVIEIEGSVSSVKKALIAVSRRLQD 220
G E I TG + +S G+ + S ++ VIEI+G S V+KAL VS +L++
Sbjct: 387 GNR--EAIIA-TGADVHISVGNQVLEWISENEVVIEIKGEYSHVQKALTHVSSKLRE 440
>AT5G15270.1 | Symbols: | RNA-binding KH domain-containing protein
| chr5:4958738-4960947 FORWARD LENGTH=548
Length = 548
Score = 210 bits (535), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 148/456 (32%), Positives = 231/456 (50%), Gaps = 43/456 (9%)
Query: 23 YSPNGSSKRARSSNHPPSIPTPSGHVAFRILCHSSRIGGVIGKSGAVIKNLQQSTGAKIR 82
Y NG SKR + S+ FR LC +IG VIG+ G ++K L+ T +KIR
Sbjct: 25 YDDNGGSKRRYRGDDRDSLVIDRDDTVFRYLCPVKKIGSVIGRGGDIVKQLRNDTRSKIR 84
Query: 83 VEDAPAESPDRVIMVIADAALTGRCHIGGEEIEFSKAQEALVKVFDRILEVAEEMGGIEI 142
+ +A +RVI + + + T G E S AQ+AL ++ DR++
Sbjct: 85 IGEAIPGCDERVITIYSPSDETN--AFGDGEKVLSPAQDALFRIHDRVVADDARSEDSPE 142
Query: 143 GDRAVSCRLVADAAQAGSVIGKGGTVVEKIKKDTGCKIRVSGD-NMPACTSSSDEVIEIE 201
G++ V+ +L+ + Q G ++G+GG +V+ I+ +TG +IR+ D NMP C +SDE+I+I
Sbjct: 143 GEKQVTAKLLVPSDQIGCILGRGGQIVQNIRSETGAQIRIVKDRNMPLCALNSDELIQIS 202
Query: 202 GSVSSVKKALIAVSRRLQDCSAADRIKMVGSKPYEVFQHETLPAVPRETFTDRHMDHHLQ 261
G V VKKAL+ ++ RL + + + + S Y + PR
Sbjct: 203 GEVLIVKKALLQIASRLHENPSRSQNLLSSSGGYPAGSLMSHAGGPR------------- 249
Query: 262 RXXXXXXXXXXXXXGVHSLPAEVNRVSPRESKALQQ---------EVTFKIICSNDRXXX 312
G+ L R + S+ L Q E +++ +
Sbjct: 250 ------------LVGLAPLMGSYGRDAGDWSRPLYQPPRNDPPATEFFIRLVSPVENIAS 297
Query: 313 XXXXXXXXXRALQSETGATISIGPAVADCDDRLISITASENPESRYSPAQKAVVLVFSRS 372
L+ ET ATI + + + +D LI+I+A E E YSP +AV+ + +
Sbjct: 298 VIGKGGALINQLRQETRATIKVDSSRTEGNDCLITISAREVFEDAYSPTIEAVMRLQPKC 357
Query: 373 VEAAIEKGIDSGLNKGSSVTARLVVPSNQVGCLLGKGGVIVSEMRRATGASIRIIGADQV 432
+ +E+ DSGL S T RL+VPS+++GC+LGKGG I++EMRR T A+IRI+G + +
Sbjct: 358 SD-KVER--DSGL---VSFTTRLLVPSSRIGCILGKGGAIITEMRRMTKANIRILGKENL 411
Query: 433 PKCASDNDQVVQISGEFSNVQDALYNATGRLRDNLL 468
PK ASD+D++VQISGE ++AL T RLR N+
Sbjct: 412 PKVASDDDEMVQISGELDVAKEALIQITSRLRANVF 447
Score = 102 bits (254), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 69/199 (34%), Positives = 106/199 (53%), Gaps = 15/199 (7%)
Query: 296 QQEVTFKIICSNDRXXXXXXXXXXXXRALQSETGATISIGPAVADCDDRLISI------- 348
+ + F+ +C + + L+++T + I IG A+ CD+R+I+I
Sbjct: 47 RDDTVFRYLCPVKKIGSVIGRGGDIVKQLRNDTRSKIRIGEAIPGCDERVITIYSPSDET 106
Query: 349 TASENPESRYSPAQKAVVLVFSRSVEAAIEKGIDSGLNKGSSVTARLVVPSNQVGCLLGK 408
A + E SPAQ A+ + R V A + DS + VTA+L+VPS+Q+GC+LG+
Sbjct: 107 NAFGDGEKVLSPAQDALFRIHDRVV-ADDARSEDSPEGE-KQVTAKLLVPSDQIGCILGR 164
Query: 409 GGVIVSEMRRATGASIRIIGADQVPKCASDNDQVVQISGEFSNVQDALYNATGRLRD--- 465
GG IV +R TGA IRI+ +P CA ++D+++QISGE V+ AL RL +
Sbjct: 165 GGQIVQNIRSETGAQIRIVKDRNMPLCALNSDELIQISGEVLIVKKALLQIASRLHENPS 224
Query: 466 ---NLLGSTQGSAATRSLS 481
NLL S+ G A +S
Sbjct: 225 RSQNLLSSSGGYPAGSLMS 243
>AT5G15270.2 | Symbols: | RNA-binding KH domain-containing protein
| chr5:4958738-4960947 FORWARD LENGTH=548
Length = 548
Score = 210 bits (535), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 148/456 (32%), Positives = 231/456 (50%), Gaps = 43/456 (9%)
Query: 23 YSPNGSSKRARSSNHPPSIPTPSGHVAFRILCHSSRIGGVIGKSGAVIKNLQQSTGAKIR 82
Y NG SKR + S+ FR LC +IG VIG+ G ++K L+ T +KIR
Sbjct: 25 YDDNGGSKRRYRGDDRDSLVIDRDDTVFRYLCPVKKIGSVIGRGGDIVKQLRNDTRSKIR 84
Query: 83 VEDAPAESPDRVIMVIADAALTGRCHIGGEEIEFSKAQEALVKVFDRILEVAEEMGGIEI 142
+ +A +RVI + + + T G E S AQ+AL ++ DR++
Sbjct: 85 IGEAIPGCDERVITIYSPSDETN--AFGDGEKVLSPAQDALFRIHDRVVADDARSEDSPE 142
Query: 143 GDRAVSCRLVADAAQAGSVIGKGGTVVEKIKKDTGCKIRVSGD-NMPACTSSSDEVIEIE 201
G++ V+ +L+ + Q G ++G+GG +V+ I+ +TG +IR+ D NMP C +SDE+I+I
Sbjct: 143 GEKQVTAKLLVPSDQIGCILGRGGQIVQNIRSETGAQIRIVKDRNMPLCALNSDELIQIS 202
Query: 202 GSVSSVKKALIAVSRRLQDCSAADRIKMVGSKPYEVFQHETLPAVPRETFTDRHMDHHLQ 261
G V VKKAL+ ++ RL + + + + S Y + PR
Sbjct: 203 GEVLIVKKALLQIASRLHENPSRSQNLLSSSGGYPAGSLMSHAGGPR------------- 249
Query: 262 RXXXXXXXXXXXXXGVHSLPAEVNRVSPRESKALQQ---------EVTFKIICSNDRXXX 312
G+ L R + S+ L Q E +++ +
Sbjct: 250 ------------LVGLAPLMGSYGRDAGDWSRPLYQPPRNDPPATEFFIRLVSPVENIAS 297
Query: 313 XXXXXXXXXRALQSETGATISIGPAVADCDDRLISITASENPESRYSPAQKAVVLVFSRS 372
L+ ET ATI + + + +D LI+I+A E E YSP +AV+ + +
Sbjct: 298 VIGKGGALINQLRQETRATIKVDSSRTEGNDCLITISAREVFEDAYSPTIEAVMRLQPKC 357
Query: 373 VEAAIEKGIDSGLNKGSSVTARLVVPSNQVGCLLGKGGVIVSEMRRATGASIRIIGADQV 432
+ +E+ DSGL S T RL+VPS+++GC+LGKGG I++EMRR T A+IRI+G + +
Sbjct: 358 SD-KVER--DSGL---VSFTTRLLVPSSRIGCILGKGGAIITEMRRMTKANIRILGKENL 411
Query: 433 PKCASDNDQVVQISGEFSNVQDALYNATGRLRDNLL 468
PK ASD+D++VQISGE ++AL T RLR N+
Sbjct: 412 PKVASDDDEMVQISGELDVAKEALIQITSRLRANVF 447
Score = 102 bits (254), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 69/199 (34%), Positives = 106/199 (53%), Gaps = 15/199 (7%)
Query: 296 QQEVTFKIICSNDRXXXXXXXXXXXXRALQSETGATISIGPAVADCDDRLISI------- 348
+ + F+ +C + + L+++T + I IG A+ CD+R+I+I
Sbjct: 47 RDDTVFRYLCPVKKIGSVIGRGGDIVKQLRNDTRSKIRIGEAIPGCDERVITIYSPSDET 106
Query: 349 TASENPESRYSPAQKAVVLVFSRSVEAAIEKGIDSGLNKGSSVTARLVVPSNQVGCLLGK 408
A + E SPAQ A+ + R V A + DS + VTA+L+VPS+Q+GC+LG+
Sbjct: 107 NAFGDGEKVLSPAQDALFRIHDRVV-ADDARSEDSPEGE-KQVTAKLLVPSDQIGCILGR 164
Query: 409 GGVIVSEMRRATGASIRIIGADQVPKCASDNDQVVQISGEFSNVQDALYNATGRLRD--- 465
GG IV +R TGA IRI+ +P CA ++D+++QISGE V+ AL RL +
Sbjct: 165 GGQIVQNIRSETGAQIRIVKDRNMPLCALNSDELIQISGEVLIVKKALLQIASRLHENPS 224
Query: 466 ---NLLGSTQGSAATRSLS 481
NLL S+ G A +S
Sbjct: 225 RSQNLLSSSGGYPAGSLMS 243
>AT5G64390.3 | Symbols: HEN4 | RNA-binding KH domain-containing
protein | chr5:25743442-25747380 FORWARD LENGTH=866
Length = 866
Score = 201 bits (512), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 99/195 (50%), Positives = 142/195 (72%), Gaps = 2/195 (1%)
Query: 289 PRESKALQQEVTFKIICSNDRXXXXXXXXXXXXRALQSETGATISIGPAVADCDDRLISI 348
P E + Q+V FKI+CS + R L SETGA I++G + DC++RLI++
Sbjct: 442 PSEVEVGNQDVVFKILCSTENAGGVIGTGGKVVRMLHSETGAFINVGNTLDDCEERLIAV 501
Query: 349 TASENPESRYSPAQKAVVLVFSRSVEAAIEKGIDSGLNKGSSVTARLVVPSNQVGCLLGK 408
TASENPE + SPAQKA++L+FSR E A K +D+G SS+TARLVVP++Q+GC+LGK
Sbjct: 502 TASENPECQSSPAQKAIMLIFSRLFELATNKILDNGPR--SSITARLVVPTSQIGCVLGK 559
Query: 409 GGVIVSEMRRATGASIRIIGADQVPKCASDNDQVVQISGEFSNVQDALYNATGRLRDNLL 468
GGVIVSEMR+ TGA+I+I+ +Q PKC S+NDQVVQI+GEF NV++A+++ T RLRD++
Sbjct: 560 GGVIVSEMRKTTGAAIQILKVEQNPKCISENDQVVQITGEFPNVREAIFHITSRLRDSVF 619
Query: 469 GSTQGSAATRSLSSV 483
++ ++ +S S++
Sbjct: 620 SNSMKNSLAKSSSAL 634
Score = 197 bits (500), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 107/230 (46%), Positives = 148/230 (64%), Gaps = 22/230 (9%)
Query: 21 DPYSPNGSSKRARS--SNHPPSIPTPSGHVAFRILCHSSRIGGVIGKSGAVIKNLQQSTG 78
DP S GSSKR ++ + ++ P GH AFR+LC S +G VIGKSG VIK LQQSTG
Sbjct: 18 DPGSGFGSSKRVKTHHTQLLSALVVPVGHAAFRLLCPLSHVGAVIGKSGNVIKQLQQSTG 77
Query: 79 AKIRVEDAPAESPDRVIMVIADAALTGRCHIGGEE------------IEFSKAQEALVKV 126
AKIRVE+ P+ SPDRVI +IA A R +G +E SKAQ AL+KV
Sbjct: 78 AKIRVEEPPSGSPDRVITIIAQADSKSRVKLGANNNGNAEGEKKEEEVEVSKAQGALIKV 137
Query: 127 FDRILEVAEEMGGIEIGDRAVSCRLVADAAQAGSVIGKGGTVVEKIKKDTGCKIRVSGDN 186
F E+ E V CRL+ +++ AG+VIGKGG +V I+K+TGCKI + +N
Sbjct: 138 F--------ELLAAEADSDTVVCRLLTESSHAGAVIGKGGQMVGSIRKETGCKISIRIEN 189
Query: 187 MPACTSSSDEVIEIEGSVSSVKKALIAVSRRLQDCSAADRIKMVGSKPYE 236
+P C + DE++E+EG+ +VKKAL+++SR LQ+C + D+++MVG++P E
Sbjct: 190 LPICADTDDEMVEVEGNAIAVKKALVSISRCLQNCQSIDKVRMVGNRPLE 239
Score = 108 bits (271), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 77/247 (31%), Positives = 130/247 (52%), Gaps = 23/247 (9%)
Query: 19 DPDPYSPNGSSKRARSSNH--PPS-IPTPSGHVAFRILCHSSRIGGVIGKSGAVIKNLQQ 75
D P+S S+ A ++ PPS + + V F+ILC + GGVIG G V++ L
Sbjct: 420 DTHPHSFTTSASMANTATMKPPPSEVEVGNQDVVFKILCSTENAGGVIGTGGKVVRMLHS 479
Query: 76 STGAKIRVEDAPAESPDRVIMVIADAALTGRCHIGGEEIEFSKAQEALVKVFDRILEVAE 135
TGA I V + + +R+I V A E + S AQ+A++ +F R+ E+A
Sbjct: 480 ETGAFINVGNTLDDCEERLIAVTASE---------NPECQSSPAQKAIMLIFSRLFELAT 530
Query: 136 EMGGIEIGDR-AVSCRLVADAAQAGSVIGKGGTVVEKIKKDTGCKIRV-SGDNMPACTSS 193
++ G R +++ RLV +Q G V+GKGG +V +++K TG I++ + P C S
Sbjct: 531 NK-ILDNGPRSSITARLVVPTSQIGCVLGKGGVIVSEMRKTTGAAIQILKVEQNPKCISE 589
Query: 194 SDEVIEIEGSVSSVKKALIAVSRRLQDCSAADRIKMVGSKPYEVFQHETLPAVPRETFTD 253
+D+V++I G +V++A+ ++ RL+D ++ +K +K + A+ E F D
Sbjct: 590 NDQVVQITGEFPNVREAIFHITSRLRDSVFSNSMKNSLAK--------SSSALTTERFYD 641
Query: 254 RHMDHHL 260
R D+ L
Sbjct: 642 RQSDNPL 648
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 76/177 (42%), Gaps = 32/177 (18%)
Query: 301 FKIICSNDRXXXXXXXXXXXXRALQSETGATISIGPAVADCDDRLISITASENPESRY-- 358
F+++C + LQ TGA I + + DR+I+I A + +SR
Sbjct: 49 FRLLCPLSHVGAVIGKSGNVIKQLQQSTGAKIRVEEPPSGSPDRVITIIAQADSKSRVKL 108
Query: 359 -------------------SPAQKAVVLVFSRSVEAAIEKGIDSGLNKGSSVTARLVVPS 399
S AQ A++ VF A DS +V RL+ S
Sbjct: 109 GANNNGNAEGEKKEEEVEVSKAQGALIKVFELLAAEA-----DS-----DTVVCRLLTES 158
Query: 400 NQVGCLLGKGGVIVSEMRRATGASIRIIGADQVPKCASDNDQVVQISGEFSNVQDAL 456
+ G ++GKGG +V +R+ TG I I + +P CA +D++V++ G V+ AL
Sbjct: 159 SHAGAVIGKGGQMVGSIRKETGCKIS-IRIENLPICADTDDEMVEVEGNAIAVKKAL 214
>AT5G64390.2 | Symbols: HEN4 | RNA-binding KH domain-containing
protein | chr5:25743442-25746742 FORWARD LENGTH=824
Length = 824
Score = 201 bits (512), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 99/195 (50%), Positives = 142/195 (72%), Gaps = 2/195 (1%)
Query: 289 PRESKALQQEVTFKIICSNDRXXXXXXXXXXXXRALQSETGATISIGPAVADCDDRLISI 348
P E + Q+V FKI+CS + R L SETGA I++G + DC++RLI++
Sbjct: 442 PSEVEVGNQDVVFKILCSTENAGGVIGTGGKVVRMLHSETGAFINVGNTLDDCEERLIAV 501
Query: 349 TASENPESRYSPAQKAVVLVFSRSVEAAIEKGIDSGLNKGSSVTARLVVPSNQVGCLLGK 408
TASENPE + SPAQKA++L+FSR E A K +D+G SS+TARLVVP++Q+GC+LGK
Sbjct: 502 TASENPECQSSPAQKAIMLIFSRLFELATNKILDNGPR--SSITARLVVPTSQIGCVLGK 559
Query: 409 GGVIVSEMRRATGASIRIIGADQVPKCASDNDQVVQISGEFSNVQDALYNATGRLRDNLL 468
GGVIVSEMR+ TGA+I+I+ +Q PKC S+NDQVVQI+GEF NV++A+++ T RLRD++
Sbjct: 560 GGVIVSEMRKTTGAAIQILKVEQNPKCISENDQVVQITGEFPNVREAIFHITSRLRDSVF 619
Query: 469 GSTQGSAATRSLSSV 483
++ ++ +S S++
Sbjct: 620 SNSMKNSLAKSSSAL 634
Score = 197 bits (500), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 107/230 (46%), Positives = 148/230 (64%), Gaps = 22/230 (9%)
Query: 21 DPYSPNGSSKRARS--SNHPPSIPTPSGHVAFRILCHSSRIGGVIGKSGAVIKNLQQSTG 78
DP S GSSKR ++ + ++ P GH AFR+LC S +G VIGKSG VIK LQQSTG
Sbjct: 18 DPGSGFGSSKRVKTHHTQLLSALVVPVGHAAFRLLCPLSHVGAVIGKSGNVIKQLQQSTG 77
Query: 79 AKIRVEDAPAESPDRVIMVIADAALTGRCHIGGEE------------IEFSKAQEALVKV 126
AKIRVE+ P+ SPDRVI +IA A R +G +E SKAQ AL+KV
Sbjct: 78 AKIRVEEPPSGSPDRVITIIAQADSKSRVKLGANNNGNAEGEKKEEEVEVSKAQGALIKV 137
Query: 127 FDRILEVAEEMGGIEIGDRAVSCRLVADAAQAGSVIGKGGTVVEKIKKDTGCKIRVSGDN 186
F E+ E V CRL+ +++ AG+VIGKGG +V I+K+TGCKI + +N
Sbjct: 138 F--------ELLAAEADSDTVVCRLLTESSHAGAVIGKGGQMVGSIRKETGCKISIRIEN 189
Query: 187 MPACTSSSDEVIEIEGSVSSVKKALIAVSRRLQDCSAADRIKMVGSKPYE 236
+P C + DE++E+EG+ +VKKAL+++SR LQ+C + D+++MVG++P E
Sbjct: 190 LPICADTDDEMVEVEGNAIAVKKALVSISRCLQNCQSIDKVRMVGNRPLE 239
Score = 108 bits (271), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 77/247 (31%), Positives = 130/247 (52%), Gaps = 23/247 (9%)
Query: 19 DPDPYSPNGSSKRARSSNH--PPS-IPTPSGHVAFRILCHSSRIGGVIGKSGAVIKNLQQ 75
D P+S S+ A ++ PPS + + V F+ILC + GGVIG G V++ L
Sbjct: 420 DTHPHSFTTSASMANTATMKPPPSEVEVGNQDVVFKILCSTENAGGVIGTGGKVVRMLHS 479
Query: 76 STGAKIRVEDAPAESPDRVIMVIADAALTGRCHIGGEEIEFSKAQEALVKVFDRILEVAE 135
TGA I V + + +R+I V A E + S AQ+A++ +F R+ E+A
Sbjct: 480 ETGAFINVGNTLDDCEERLIAVTASE---------NPECQSSPAQKAIMLIFSRLFELAT 530
Query: 136 EMGGIEIGDR-AVSCRLVADAAQAGSVIGKGGTVVEKIKKDTGCKIRV-SGDNMPACTSS 193
++ G R +++ RLV +Q G V+GKGG +V +++K TG I++ + P C S
Sbjct: 531 NK-ILDNGPRSSITARLVVPTSQIGCVLGKGGVIVSEMRKTTGAAIQILKVEQNPKCISE 589
Query: 194 SDEVIEIEGSVSSVKKALIAVSRRLQDCSAADRIKMVGSKPYEVFQHETLPAVPRETFTD 253
+D+V++I G +V++A+ ++ RL+D ++ +K +K + A+ E F D
Sbjct: 590 NDQVVQITGEFPNVREAIFHITSRLRDSVFSNSMKNSLAK--------SSSALTTERFYD 641
Query: 254 RHMDHHL 260
R D+ L
Sbjct: 642 RQSDNPL 648
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 76/177 (42%), Gaps = 32/177 (18%)
Query: 301 FKIICSNDRXXXXXXXXXXXXRALQSETGATISIGPAVADCDDRLISITASENPESRY-- 358
F+++C + LQ TGA I + + DR+I+I A + +SR
Sbjct: 49 FRLLCPLSHVGAVIGKSGNVIKQLQQSTGAKIRVEEPPSGSPDRVITIIAQADSKSRVKL 108
Query: 359 -------------------SPAQKAVVLVFSRSVEAAIEKGIDSGLNKGSSVTARLVVPS 399
S AQ A++ VF A DS +V RL+ S
Sbjct: 109 GANNNGNAEGEKKEEEVEVSKAQGALIKVFELLAAEA-----DS-----DTVVCRLLTES 158
Query: 400 NQVGCLLGKGGVIVSEMRRATGASIRIIGADQVPKCASDNDQVVQISGEFSNVQDAL 456
+ G ++GKGG +V +R+ TG I I + +P CA +D++V++ G V+ AL
Sbjct: 159 SHAGAVIGKGGQMVGSIRKETGCKIS-IRIENLPICADTDDEMVEVEGNAIAVKKAL 214
>AT5G64390.1 | Symbols: HEN4 | RNA-binding KH domain-containing
protein | chr5:25743442-25747380 FORWARD LENGTH=857
Length = 857
Score = 201 bits (511), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 99/198 (50%), Positives = 143/198 (72%), Gaps = 2/198 (1%)
Query: 289 PRESKALQQEVTFKIICSNDRXXXXXXXXXXXXRALQSETGATISIGPAVADCDDRLISI 348
P E + Q+V FKI+CS + R L SETGA I++G + DC++RLI++
Sbjct: 442 PSEVEVGNQDVVFKILCSTENAGGVIGTGGKVVRMLHSETGAFINVGNTLDDCEERLIAV 501
Query: 349 TASENPESRYSPAQKAVVLVFSRSVEAAIEKGIDSGLNKGSSVTARLVVPSNQVGCLLGK 408
TASENPE + SPAQKA++L+FSR E A K +D+G SS+TARLVVP++Q+GC+LGK
Sbjct: 502 TASENPECQSSPAQKAIMLIFSRLFELATNKILDNGPR--SSITARLVVPTSQIGCVLGK 559
Query: 409 GGVIVSEMRRATGASIRIIGADQVPKCASDNDQVVQISGEFSNVQDALYNATGRLRDNLL 468
GGVIVSEMR+ TGA+I+I+ +Q PKC S+NDQVVQI+GEF NV++A+++ T RLRD++
Sbjct: 560 GGVIVSEMRKTTGAAIQILKVEQNPKCISENDQVVQITGEFPNVREAIFHITSRLRDSVF 619
Query: 469 GSTQGSAATRSLSSVRAD 486
++ ++ +S S++ +
Sbjct: 620 SNSMKNSLAKSSSALTTE 637
Score = 197 bits (500), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 107/230 (46%), Positives = 148/230 (64%), Gaps = 22/230 (9%)
Query: 21 DPYSPNGSSKRARS--SNHPPSIPTPSGHVAFRILCHSSRIGGVIGKSGAVIKNLQQSTG 78
DP S GSSKR ++ + ++ P GH AFR+LC S +G VIGKSG VIK LQQSTG
Sbjct: 18 DPGSGFGSSKRVKTHHTQLLSALVVPVGHAAFRLLCPLSHVGAVIGKSGNVIKQLQQSTG 77
Query: 79 AKIRVEDAPAESPDRVIMVIADAALTGRCHIGGEE------------IEFSKAQEALVKV 126
AKIRVE+ P+ SPDRVI +IA A R +G +E SKAQ AL+KV
Sbjct: 78 AKIRVEEPPSGSPDRVITIIAQADSKSRVKLGANNNGNAEGEKKEEEVEVSKAQGALIKV 137
Query: 127 FDRILEVAEEMGGIEIGDRAVSCRLVADAAQAGSVIGKGGTVVEKIKKDTGCKIRVSGDN 186
F E+ E V CRL+ +++ AG+VIGKGG +V I+K+TGCKI + +N
Sbjct: 138 F--------ELLAAEADSDTVVCRLLTESSHAGAVIGKGGQMVGSIRKETGCKISIRIEN 189
Query: 187 MPACTSSSDEVIEIEGSVSSVKKALIAVSRRLQDCSAADRIKMVGSKPYE 236
+P C + DE++E+EG+ +VKKAL+++SR LQ+C + D+++MVG++P E
Sbjct: 190 LPICADTDDEMVEVEGNAIAVKKALVSISRCLQNCQSIDKVRMVGNRPLE 239
Score = 108 bits (271), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 77/247 (31%), Positives = 130/247 (52%), Gaps = 23/247 (9%)
Query: 19 DPDPYSPNGSSKRARSSNH--PPS-IPTPSGHVAFRILCHSSRIGGVIGKSGAVIKNLQQ 75
D P+S S+ A ++ PPS + + V F+ILC + GGVIG G V++ L
Sbjct: 420 DTHPHSFTTSASMANTATMKPPPSEVEVGNQDVVFKILCSTENAGGVIGTGGKVVRMLHS 479
Query: 76 STGAKIRVEDAPAESPDRVIMVIADAALTGRCHIGGEEIEFSKAQEALVKVFDRILEVAE 135
TGA I V + + +R+I V A E + S AQ+A++ +F R+ E+A
Sbjct: 480 ETGAFINVGNTLDDCEERLIAVTASE---------NPECQSSPAQKAIMLIFSRLFELAT 530
Query: 136 EMGGIEIGDR-AVSCRLVADAAQAGSVIGKGGTVVEKIKKDTGCKIRV-SGDNMPACTSS 193
++ G R +++ RLV +Q G V+GKGG +V +++K TG I++ + P C S
Sbjct: 531 NK-ILDNGPRSSITARLVVPTSQIGCVLGKGGVIVSEMRKTTGAAIQILKVEQNPKCISE 589
Query: 194 SDEVIEIEGSVSSVKKALIAVSRRLQDCSAADRIKMVGSKPYEVFQHETLPAVPRETFTD 253
+D+V++I G +V++A+ ++ RL+D ++ +K +K + A+ E F D
Sbjct: 590 NDQVVQITGEFPNVREAIFHITSRLRDSVFSNSMKNSLAK--------SSSALTTERFYD 641
Query: 254 RHMDHHL 260
R D+ L
Sbjct: 642 RQSDNPL 648
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 76/177 (42%), Gaps = 32/177 (18%)
Query: 301 FKIICSNDRXXXXXXXXXXXXRALQSETGATISIGPAVADCDDRLISITASENPESRY-- 358
F+++C + LQ TGA I + + DR+I+I A + +SR
Sbjct: 49 FRLLCPLSHVGAVIGKSGNVIKQLQQSTGAKIRVEEPPSGSPDRVITIIAQADSKSRVKL 108
Query: 359 -------------------SPAQKAVVLVFSRSVEAAIEKGIDSGLNKGSSVTARLVVPS 399
S AQ A++ VF A DS +V RL+ S
Sbjct: 109 GANNNGNAEGEKKEEEVEVSKAQGALIKVFELLAAEA-----DS-----DTVVCRLLTES 158
Query: 400 NQVGCLLGKGGVIVSEMRRATGASIRIIGADQVPKCASDNDQVVQISGEFSNVQDAL 456
+ G ++GKGG +V +R+ TG I I + +P CA +D++V++ G V+ AL
Sbjct: 159 SHAGAVIGKGGQMVGSIRKETGCKIS-IRIENLPICADTDDEMVEVEGNAIAVKKAL 214
>AT5G53060.1 | Symbols: | RNA-binding KH domain-containing protein
| chr5:21515355-21518197 FORWARD LENGTH=652
Length = 652
Score = 196 bits (499), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 145/455 (31%), Positives = 230/455 (50%), Gaps = 47/455 (10%)
Query: 34 SSNHPPSIPTPSGHVAFRILCHSSRIGGVIGKSGAVIKNLQQSTGAKIRVEDAPAESPDR 93
S +HP ++ T +RILCH ++ GGVIGKSG +IK+++Q TGA I V + +R
Sbjct: 58 SKSHPETMAT----TTYRILCHDAKAGGVIGKSGTIIKSIRQHTGAWINVHELVPGDAER 113
Query: 94 VIMVIADAALTGRCHIGGEEIEFSKAQEALVKVFDRILEVAEEMG-------------GI 140
+I I+D R G FS AQEAL V DRILE + G G+
Sbjct: 114 IIE-ISD---NRRRDPDGRMPSFSPAQEALFSVHDRILESEAQFGYGGPPPEEEEDYGGV 169
Query: 141 EIGDRAVSCRLVADAAQAGSVIGKGGTVVEKIKKDTGCKIRV--SGDNMPACTSSSDEVI 198
G V RLV G ++GKGG ++E+++ +T IR+ N+P C S S+E++
Sbjct: 170 RPGGGRVVTRLVVSRMHVGCLLGKGGKIIEQMRIETKTHIRILPRESNLPRCVSLSEEIV 229
Query: 199 EIEGSVSSVKKALIAVSRRLQDCSAADRIKMVG-----SKPYEVFQHETLPAVPRETFTD 253
+I G +++VK AL VS RL++ DR G + + + +P + R++ +D
Sbjct: 230 QIVGELNAVKNALAIVSSRLRESQHRDRSNFQGRSHSPERSFAAAGDDYMPQLRRQS-SD 288
Query: 254 RHMDHHLQRXXXXXXXXXXXXXGVHSLPAEVNRVSPRESKALQQEVTFKIICSNDRXXXX 313
R + + S AE P +E+ F+I+C D+
Sbjct: 289 RFPRGNFRNNNFSSR---------QSNYAEEAPAVPVGENVYSEELVFQILCPADKIVRV 339
Query: 314 XXXXXXXXRALQSETGATISIGPAVADCDDRLISITASENPESRYSPAQKAVVLVFSRSV 373
LQ+E G + + VA D+++I+I++ E P+ + PAQ+A++ + ++
Sbjct: 340 VGESQGIIDLLQNEIGVDVRVSDPVAGSDEQIITISSEEAPDDPFFPAQEALLHIQTQI- 398
Query: 374 EAAIEKGIDSGLNKGSSVTARLVVPSNQVGCLLGKGGVIVSEMRRATGASIRIIGADQVP 433
ID +K + +T RL+VPS CL GK G VSE+ R TG S++I+ +++P
Sbjct: 399 -------IDLIPDKDNLITTRLLVPSRDSICLEGKAGS-VSEISRLTGTSVQILAREEIP 450
Query: 434 KCASDNDQVVQISGEFSNVQDALYNATGRLRDNLL 468
+CAS ND V+QI+GE ++AL T LR ++
Sbjct: 451 RCASINDVVIQITGEIRAAREALVELTLLLRSHMF 485
>AT5G46190.1 | Symbols: | RNA-binding KH domain-containing protein
| chr5:18723435-18725834 REVERSE LENGTH=644
Length = 644
Score = 159 bits (401), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 140/448 (31%), Positives = 214/448 (47%), Gaps = 42/448 (9%)
Query: 48 VAFRILCHSSRIGGVIGKSGAVIKNLQQSTGAKIRVEDAPAESPDRVIMVIADAALTGR- 106
V +RILC S +G VIGKSG VI ++Q T A+I+V D +RVI + +
Sbjct: 44 VVYRILCPSGVMGSVIGKSGKVINLIRQETRARIKVVDPFPGCSERVITIFCSVSEKKDI 103
Query: 107 CHIGGEEIEFS----KAQEALVKVFDRI---LEVAEEMGGIEIGDRAVSCRLVADAAQAG 159
I E+++S AQ AL+KV D I L A E I+ D CRL+ ++Q
Sbjct: 104 VDIEYSELDYSVPLCSAQAALLKVHDAIVASLATAAENTKIDRDDFR-ECRLLVPSSQCS 162
Query: 160 SVIGKGGTVVEKIKKDTGCKIRVSGDNMP----ACTSSSDEVIEIEGSVSSVKKALIAVS 215
VIGK G++++ I+ T ++V ++ C D ++ I G SVKKAL AVS
Sbjct: 163 IVIGKSGSIIKNIRGRTRANVKVVSKDVSDPSHTCAMDFDNIVMISGETESVKKALFAVS 222
Query: 216 RRLQDCSAADRIKM---VGSKPYEVFQHETLPAVPRETFTDRHMDHHLQRXXXXXXXXXX 272
+ S ++I + V P + L P+ D Q
Sbjct: 223 AIMYKVSPREQIPLDTTVQEVPASIIIPSDLSIYPQAGLYPSQ-DSIFQHGANVSSFIGT 281
Query: 273 XXXGVHSLPAEVNRVSPRESKAL-----------QQEVTFKIICSNDRXXXXXXXXXXXX 321
G A N V + AL +++ K+ICS+ +
Sbjct: 282 LPQGYGENAA--NPVPVFSASALPVVHGFGGSSRSEKLAIKVICSSSKIGRVIGKGGLTI 339
Query: 322 RALQSETGATISIGPAVADCDDR-LISITASENPESRYSPAQKAVVLVFSRSVEAAIEKG 380
+ ++ +G+ I + + + DD +I++TA+E+P+ S A +AV+L+ EK
Sbjct: 340 KGIRQASGSHIEVNDSRTNHDDDCVITVTATESPDDLKSMAVEAVLLLQ--------EKI 391
Query: 381 IDSGLNKGSSVTARLVVPSNQVGCLLGKGGVIVSEMRRATGASIRIIGADQVPKCASDND 440
D +K V +L+V S +GC++GK G I+SE+R+ T A I I + PKCA ND
Sbjct: 392 NDEDEDK---VKMQLLVSSKVIGCIIGKSGSIISEIRKRTKADIHISKGNNTPKCADPND 448
Query: 441 QVVQISGEFSNVQDALYNATGRLRDNLL 468
++V+ISGE SNV+DAL RLRD++L
Sbjct: 449 ELVEISGEVSNVRDALIQIVLRLRDDVL 476
Score = 88.6 bits (218), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 60/183 (32%), Positives = 101/183 (55%), Gaps = 18/183 (9%)
Query: 45 SGHVAFRILCHSSRIGGVIGKSGAVIKNLQQSTGAKIRVEDAPAESPDRVIMVIADAALT 104
S +A +++C SS+IG VIGK G IK ++Q++G+ I V D+ D D +T
Sbjct: 314 SEKLAIKVICSSSKIGRVIGKGGLTIKGIRQASGSHIEVNDSRTNHDD-------DCVIT 366
Query: 105 GRCHIGGEEIEFSKAQEALVKVFDRILEVAEEMGGIEIGDRAVSCRLVADAAQAGSVIGK 164
++++ S A EA++ + ++I + E+ V +L+ + G +IGK
Sbjct: 367 VTATESPDDLK-SMAVEAVLLLQEKINDEDED---------KVKMQLLVSSKVIGCIIGK 416
Query: 165 GGTVVEKIKKDTGCKIRVS-GDNMPACTSSSDEVIEIEGSVSSVKKALIAVSRRLQDCSA 223
G+++ +I+K T I +S G+N P C +DE++EI G VS+V+ ALI + RL+D
Sbjct: 417 SGSIISEIRKRTKADIHISKGNNTPKCADPNDELVEISGEVSNVRDALIQIVLRLRDDVL 476
Query: 224 ADR 226
DR
Sbjct: 477 RDR 479
>AT1G14170.3 | Symbols: | RNA-binding KH domain-containing protein
| chr1:4843463-4845253 REVERSE LENGTH=479
Length = 479
Score = 158 bits (400), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 133/474 (28%), Positives = 216/474 (45%), Gaps = 53/474 (11%)
Query: 1 MGSSFFSPPAKRSMLGISDPDPYSPNGSSKRARSSNHPPSIPTPSGHVAFRILCHSSRIG 60
M S+ + KRS L ++ NG SKR + S +R LC + G
Sbjct: 1 MASTLRNIHGKRSNL----QSEFTGNGGSKRRNLHDETDQNVIASEDTVYRYLCPVKKTG 56
Query: 61 GVIGKSGAVIKNLQQSTGAKIRVEDAPAESPDRVI-MVIADAALTGRCHIGGEEIEFSKA 119
+IGK G + K ++ T + +R+ +A +RV+ M + L H G + A
Sbjct: 57 SIIGKGGEIAKQIRSETKSNMRINEALPGCEERVVTMYSTNEELN---HFGDDGELVCPA 113
Query: 120 QEALVKVFDRIL----EVAEEMGGIEIGDR-AVSCRLVADAAQAGSVIGKGGTVVEKIKK 174
+AL KV D ++ + ++G++ V+ R++ + Q G VIGKGG V++ ++
Sbjct: 114 LDALFKVHDMVVADADQDDGTDDDNDLGEKQTVTVRMLVPSDQIGCVIGKGGQVIQNLRN 173
Query: 175 DTGCKIRVSGDNMPAC--TSSSDEVIEIEGSVSSVKKALIAVSRRLQDCSAADRIKMVGS 232
DT +IRV D++PAC T S DE++ I G V++AL V+ L D + R + +
Sbjct: 174 DTNAQIRVIKDHLPACALTLSHDELLLIIGEPLVVREALYQVASLLHDNPS--RFQHLLL 231
Query: 233 KPYEVFQHETLPAVPRETFTDRHMDHHLQRXXXXXXXXXXXXXGVHSLPAEVNRVSPRES 292
H+ + T H ++ ++R
Sbjct: 232 SSSSSSMHQPGAMLMSAALTSSHRNYAVRRDI---------------------------- 263
Query: 293 KALQQEVTFKIICSNDRXXXXXXXXXXXXRALQSETGATISIGPAVADCDDRLISITASE 352
A +E IC + ++ ETGATI + + D DD +I I++ E
Sbjct: 264 -ADAREFCVCFICPAENVGGVIGKGGGFINQIRQETGATIRVNTSETDDDDCIIFISSKE 322
Query: 353 NPESRYSPAQKAVVLVFSRSVEAAIEKGIDSGLNKGSSVTARLVVPSNQVGCLLGKGGVI 412
E + SPA A + + R E + D +++ RL+V S+Q+GCL+GKGG +
Sbjct: 323 FYEDQ-SPAVNAAIRLQQRCSEKVGKDAND------LAISTRLLVSSSQIGCLIGKGGAV 375
Query: 413 VSEMRRATGASIRIIGADQVPKCASDNDQVVQISGEFSNVQDALYNATGRLRDN 466
+SEMR T A+IRI+ + VPK A +++++VQI+G AL RLR N
Sbjct: 376 ISEMRSVTRANIRILQKEDVPKIAREDEEMVQITGSPDAAMKALTQVILRLRAN 429
>AT1G14170.2 | Symbols: | RNA-binding KH domain-containing protein
| chr1:4843463-4845253 REVERSE LENGTH=446
Length = 446
Score = 150 bits (379), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 121/426 (28%), Positives = 198/426 (46%), Gaps = 49/426 (11%)
Query: 49 AFRILCHSSRIGGVIGKSGAVIKNLQQSTGAKIRVEDAPAESPDRVI-MVIADAALTGRC 107
+R LC + G +IGK G + K ++ T + +R+ +A +RV+ M + L
Sbjct: 12 VYRYLCPVKKTGSIIGKGGEIAKQIRSETKSNMRINEALPGCEERVVTMYSTNEELN--- 68
Query: 108 HIGGEEIEFSKAQEALVKVFDRIL----EVAEEMGGIEIGDR-AVSCRLVADAAQAGSVI 162
H G + A +AL KV D ++ + ++G++ V+ R++ + Q G VI
Sbjct: 69 HFGDDGELVCPALDALFKVHDMVVADADQDDGTDDDNDLGEKQTVTVRMLVPSDQIGCVI 128
Query: 163 GKGGTVVEKIKKDTGCKIRVSGDNMPAC--TSSSDEVIEIEGSVSSVKKALIAVSRRLQD 220
GKGG V++ ++ DT +IRV D++PAC T S DE++ I G V++AL V+ L D
Sbjct: 129 GKGGQVIQNLRNDTNAQIRVIKDHLPACALTLSHDELLLIIGEPLVVREALYQVASLLHD 188
Query: 221 CSAADRIKMVGSKPYEVFQHETLPAVPRETFTDRHMDHHLQRXXXXXXXXXXXXXGVHSL 280
R + + H+ + T H ++ ++R
Sbjct: 189 --NPSRFQHLLLSSSSSSMHQPGAMLMSAALTSSHRNYAVRRDI---------------- 230
Query: 281 PAEVNRVSPRESKALQQEVTFKIICSNDRXXXXXXXXXXXXRALQSETGATISIGPAVAD 340
A +E IC + ++ ETGATI + + D
Sbjct: 231 -------------ADAREFCVCFICPAENVGGVIGKGGGFINQIRQETGATIRVNTSETD 277
Query: 341 CDDRLISITASENPESRYSPAQKAVVLVFSRSVEAAIEKGIDSGLNKGSSVTARLVVPSN 400
DD +I I++ E E + SPA A + + R E + D +++ RL+V S+
Sbjct: 278 DDDCIIFISSKEFYEDQ-SPAVNAAIRLQQRCSEKVGKDANDL------AISTRLLVSSS 330
Query: 401 QVGCLLGKGGVIVSEMRRATGASIRIIGADQVPKCASDNDQVVQISGEFSNVQDALYNAT 460
Q+GCL+GKGG ++SEMR T A+IRI+ + VPK A +++++VQI+G AL
Sbjct: 331 QIGCLIGKGGAVISEMRSVTRANIRILQKEDVPKIAREDEEMVQITGSPDAAMKALTQVI 390
Query: 461 GRLRDN 466
RLR N
Sbjct: 391 LRLRAN 396
Score = 76.6 bits (187), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 92/181 (50%), Gaps = 13/181 (7%)
Query: 298 EVTFKIICSNDRXXXXXXXXXXXXRALQSETGATISIGPAVADCDDRLISITASENPESR 357
+ ++ +C + + ++SET + + I A+ C++R++++ ++ +
Sbjct: 10 DTVYRYLCPVKKTGSIIGKGGEIAKQIRSETKSNMRINEALPGCEERVVTMYSTNEELNH 69
Query: 358 YS-------PAQKAVVLVFSRSV---EAAIEKGIDSGLNKGSSVTARLVVPSNQVGCLLG 407
+ PA A+ V V + D+ L + +VT R++VPS+Q+GC++G
Sbjct: 70 FGDDGELVCPALDALFKVHDMVVADADQDDGTDDDNDLGEKQTVTVRMLVPSDQIGCVIG 129
Query: 408 KGGVIVSEMRRATGASIRIIGADQVPKCA--SDNDQVVQISGEFSNVQDALYNATGRLRD 465
KGG ++ +R T A IR+I D +P CA +D+++ I GE V++ALY L D
Sbjct: 130 KGGQVIQNLRNDTNAQIRVI-KDHLPACALTLSHDELLLIIGEPLVVREALYQVASLLHD 188
Query: 466 N 466
N
Sbjct: 189 N 189
>AT1G14170.1 | Symbols: | RNA-binding KH domain-containing protein
| chr1:4843463-4845253 REVERSE LENGTH=454
Length = 454
Score = 150 bits (379), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 122/426 (28%), Positives = 200/426 (46%), Gaps = 49/426 (11%)
Query: 49 AFRILCHSSRIGGVIGKSGAVIKNLQQSTGAKIRVEDAPAESPDRVI-MVIADAALTGRC 107
+R LC + G +IGK G + K ++ T + +R+ +A +RV+ M + L
Sbjct: 20 VYRYLCPVKKTGSIIGKGGEIAKQIRSETKSNMRINEALPGCEERVVTMYSTNEELN--- 76
Query: 108 HIGGEEIEFSKAQEALVKVFDRIL----EVAEEMGGIEIGDR-AVSCRLVADAAQAGSVI 162
H G + A +AL KV D ++ + ++G++ V+ R++ + Q G VI
Sbjct: 77 HFGDDGELVCPALDALFKVHDMVVADADQDDGTDDDNDLGEKQTVTVRMLVPSDQIGCVI 136
Query: 163 GKGGTVVEKIKKDTGCKIRVSGDNMPAC--TSSSDEVIEIEGSVSSVKKALIAVSRRLQD 220
GKGG V++ ++ DT +IRV D++PAC T S DE++ I G V++AL V+ L D
Sbjct: 137 GKGGQVIQNLRNDTNAQIRVIKDHLPACALTLSHDELLLIIGEPLVVREALYQVASLLHD 196
Query: 221 CSAADRIKMVGSKPYEVFQHETLPAVPRETFTDRHMDHHLQRXXXXXXXXXXXXXGVHSL 280
+ R + + H+ + T H ++ ++R
Sbjct: 197 NPS--RFQHLLLSSSSSSMHQPGAMLMSAALTSSHRNYAVRRDI---------------- 238
Query: 281 PAEVNRVSPRESKALQQEVTFKIICSNDRXXXXXXXXXXXXRALQSETGATISIGPAVAD 340
A +E IC + ++ ETGATI + + D
Sbjct: 239 -------------ADAREFCVCFICPAENVGGVIGKGGGFINQIRQETGATIRVNTSETD 285
Query: 341 CDDRLISITASENPESRYSPAQKAVVLVFSRSVEAAIEKGIDSGLNKGSSVTARLVVPSN 400
DD +I I++ E E + SPA A + + R E G D+ +++ RL+V S+
Sbjct: 286 DDDCIIFISSKEFYEDQ-SPAVNAAIRLQQRCSEKV---GKDAN---DLAISTRLLVSSS 338
Query: 401 QVGCLLGKGGVIVSEMRRATGASIRIIGADQVPKCASDNDQVVQISGEFSNVQDALYNAT 460
Q+GCL+GKGG ++SEMR T A+IRI+ + VPK A +++++VQI+G AL
Sbjct: 339 QIGCLIGKGGAVISEMRSVTRANIRILQKEDVPKIAREDEEMVQITGSPDAAMKALTQVI 398
Query: 461 GRLRDN 466
RLR N
Sbjct: 399 LRLRAN 404
Score = 77.0 bits (188), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 93/182 (51%), Gaps = 13/182 (7%)
Query: 297 QEVTFKIICSNDRXXXXXXXXXXXXRALQSETGATISIGPAVADCDDRLISITASENPES 356
++ ++ +C + + ++SET + + I A+ C++R++++ ++ +
Sbjct: 17 EDTVYRYLCPVKKTGSIIGKGGEIAKQIRSETKSNMRINEALPGCEERVVTMYSTNEELN 76
Query: 357 RYS-------PAQKAVVLVFSRSV---EAAIEKGIDSGLNKGSSVTARLVVPSNQVGCLL 406
+ PA A+ V V + D+ L + +VT R++VPS+Q+GC++
Sbjct: 77 HFGDDGELVCPALDALFKVHDMVVADADQDDGTDDDNDLGEKQTVTVRMLVPSDQIGCVI 136
Query: 407 GKGGVIVSEMRRATGASIRIIGADQVPKCA--SDNDQVVQISGEFSNVQDALYNATGRLR 464
GKGG ++ +R T A IR+I D +P CA +D+++ I GE V++ALY L
Sbjct: 137 GKGGQVIQNLRNDTNAQIRVI-KDHLPACALTLSHDELLLIIGEPLVVREALYQVASLLH 195
Query: 465 DN 466
DN
Sbjct: 196 DN 197
>AT4G18375.1 | Symbols: | RNA-binding KH domain-containing protein
| chr4:10152825-10154836 FORWARD LENGTH=532
Length = 532
Score = 135 bits (341), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 135/468 (28%), Positives = 219/468 (46%), Gaps = 67/468 (14%)
Query: 48 VAFRILCHSSRIGGVIGKSGAVIKNLQQSTGAKIRVEDAPAESPDRVIMVIADAALTGRC 107
V +RILC +GGVIGKSG VI ++ +T AKI+V D RVI + C
Sbjct: 36 VVYRILCPIDVVGGVIGKSGKVINAIRHNTKAKIKVFDQLHGCSQRVITIY--------C 87
Query: 108 HI--GGEEIEFSK--------AQEALVKVFDRILEVAEEMGGIEIGDR--AVSCRLVADA 155
+ EEI F+K AQ+AL+KV+D I+ EE DR CRL+
Sbjct: 88 SVKEKQEEIGFTKSENEPLCCAQDALLKVYDAIVASDEENNTKTNVDRDDNKECRLLVPF 147
Query: 156 AQAGSVIGKGGTVVEKIKKDTGCKIRVSGDNMP----ACTSSSDEVIEIEGSVSSVKKAL 211
+Q+ S+IGK G +++I++ T ++V ++ C D V+ I G SVK+AL
Sbjct: 148 SQSSSLIGKAGENIKRIRRRTRASVKVVSKDVSDPSHVCAMEYDNVVVISGEPESVKQAL 207
Query: 212 IAVSRRLQDCSAADRIKM------VGSKPYEVFQHETLPAVPRETFTDRHMDHHLQRXXX 265
AVS + + + I + V + V + P+ F + DH LQ+
Sbjct: 208 FAVSAIMYKINPRENIPLDSTSQDVPAASVIVPSDLSNSVYPQTGFYS-NQDHILQQGAG 266
Query: 266 XXXXXXXXXXGVHSLPAEV--NRVSPRESKAL-----------QQEVTFKIICSNDRXXX 312
AE N V P + +L +E+ FK++C
Sbjct: 267 VPSYFNALSVSDFQGYAETAANPV-PVFASSLPVTHGFGGSSRSEELVFKVLCPLCNIMR 325
Query: 313 XXXXXXXXXRALQSETGATISIGPAVADC--DDRLISITASENPESRYSPAQKAVVLVFS 370
+ ++ +G+ I + + C D+ +I +TA+E+P+ S A +AV+L
Sbjct: 326 VIGKGGSTIKRIREASGSCIEVNDSRTKCGDDECVIIVTATESPDDMKSMAVEAVLL--- 382
Query: 371 RSVEAAIEKGIDSGLNKGSSVTARLVVPSNQVGCLLGKGGVIVSEMRRATGASIRIIGAD 430
+++ I+ +V +L+V S +GC++GK G +++E+R+ T A+I I
Sbjct: 383 ------LQEYIND--EDAENVKMQLLVSSKVIGCVIGKSGSVINEIRKRTNANICISKGK 434
Query: 431 QVPKCASDNDQVVQISGEFSNVQDALYNATGRLRDNLLGSTQGSAATR 478
+ D +V++SGE S+V+DAL RLR+++LG + S ATR
Sbjct: 435 K--------DDLVEVSGEVSSVRDALIQIVLRLREDVLGD-KDSVATR 473
Score = 66.6 bits (161), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 55/204 (26%), Positives = 89/204 (43%), Gaps = 51/204 (25%)
Query: 45 SGHVAFRILCHSSRIGGVIGKSGAVIKNLQQSTGAKIRVEDA--------------PAES 90
S + F++LC I VIGK G+ IK +++++G+ I V D+ ES
Sbjct: 309 SEELVFKVLCPLCNIMRVIGKGGSTIKRIREASGSCIEVNDSRTKCGDDECVIIVTATES 368
Query: 91 PDRVIMVIADAALTGRCHIGGEEIEFSKAQEALVKVFDRILEVAEEMGGIEIGDRAVSCR 150
PD + + +A L + +I E+ E K Q
Sbjct: 369 PDDMKSMAVEAVLLLQEYINDEDAENVKMQ------------------------------ 398
Query: 151 LVADAAQAGSVIGKGGTVVEKIKKDTGCKIRVSGDNMPACTSSSDEVIEIEGSVSSVKKA 210
L+ + G VIGK G+V+ +I+K T I +S D+++E+ G VSSV+ A
Sbjct: 399 LLVSSKVIGCVIGKSGSVINEIRKRTNANICIS-------KGKKDDLVEVSGEVSSVRDA 451
Query: 211 LIAVSRRLQDCSAADRIKMVGSKP 234
LI + RL++ D+ + KP
Sbjct: 452 LIQIVLRLREDVLGDKDSVATRKP 475
>AT4G18375.2 | Symbols: | RNA-binding KH domain-containing protein
| chr4:10152825-10155125 FORWARD LENGTH=606
Length = 606
Score = 135 bits (339), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 135/468 (28%), Positives = 219/468 (46%), Gaps = 67/468 (14%)
Query: 48 VAFRILCHSSRIGGVIGKSGAVIKNLQQSTGAKIRVEDAPAESPDRVIMVIADAALTGRC 107
V +RILC +GGVIGKSG VI ++ +T AKI+V D RVI + C
Sbjct: 36 VVYRILCPIDVVGGVIGKSGKVINAIRHNTKAKIKVFDQLHGCSQRVITIY--------C 87
Query: 108 HI--GGEEIEFSK--------AQEALVKVFDRILEVAEEMGGIEIGDR--AVSCRLVADA 155
+ EEI F+K AQ+AL+KV+D I+ EE DR CRL+
Sbjct: 88 SVKEKQEEIGFTKSENEPLCCAQDALLKVYDAIVASDEENNTKTNVDRDDNKECRLLVPF 147
Query: 156 AQAGSVIGKGGTVVEKIKKDTGCKIRVSGDNMP----ACTSSSDEVIEIEGSVSSVKKAL 211
+Q+ S+IGK G +++I++ T ++V ++ C D V+ I G SVK+AL
Sbjct: 148 SQSSSLIGKAGENIKRIRRRTRASVKVVSKDVSDPSHVCAMEYDNVVVISGEPESVKQAL 207
Query: 212 IAVSRRLQDCSAADRIKM------VGSKPYEVFQHETLPAVPRETFTDRHMDHHLQRXXX 265
AVS + + + I + V + V + P+ F + DH LQ+
Sbjct: 208 FAVSAIMYKINPRENIPLDSTSQDVPAASVIVPSDLSNSVYPQTGFYS-NQDHILQQGAG 266
Query: 266 XXXXXXXXXXGVHSLPAEV--NRVSPRESKAL-----------QQEVTFKIICSNDRXXX 312
AE N V P + +L +E+ FK++C
Sbjct: 267 VPSYFNALSVSDFQGYAETAANPV-PVFASSLPVTHGFGGSSRSEELVFKVLCPLCNIMR 325
Query: 313 XXXXXXXXXRALQSETGATISIGPAVADC--DDRLISITASENPESRYSPAQKAVVLVFS 370
+ ++ +G+ I + + C D+ +I +TA+E+P+ S A +AV+L
Sbjct: 326 VIGKGGSTIKRIREASGSCIEVNDSRTKCGDDECVIIVTATESPDDMKSMAVEAVLL--- 382
Query: 371 RSVEAAIEKGIDSGLNKGSSVTARLVVPSNQVGCLLGKGGVIVSEMRRATGASIRIIGAD 430
+++ I+ +V +L+V S +GC++GK G +++E+R+ T A+I I
Sbjct: 383 ------LQEYIND--EDAENVKMQLLVSSKVIGCVIGKSGSVINEIRKRTNANICISKGK 434
Query: 431 QVPKCASDNDQVVQISGEFSNVQDALYNATGRLRDNLLGSTQGSAATR 478
+ D +V++SGE S+V+DAL RLR+++LG + S ATR
Sbjct: 435 K--------DDLVEVSGEVSSVRDALIQIVLRLREDVLGD-KDSVATR 473
Score = 65.9 bits (159), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 55/204 (26%), Positives = 89/204 (43%), Gaps = 51/204 (25%)
Query: 45 SGHVAFRILCHSSRIGGVIGKSGAVIKNLQQSTGAKIRVEDA--------------PAES 90
S + F++LC I VIGK G+ IK +++++G+ I V D+ ES
Sbjct: 309 SEELVFKVLCPLCNIMRVIGKGGSTIKRIREASGSCIEVNDSRTKCGDDECVIIVTATES 368
Query: 91 PDRVIMVIADAALTGRCHIGGEEIEFSKAQEALVKVFDRILEVAEEMGGIEIGDRAVSCR 150
PD + + +A L + +I E+ E K Q
Sbjct: 369 PDDMKSMAVEAVLLLQEYINDEDAENVKMQ------------------------------ 398
Query: 151 LVADAAQAGSVIGKGGTVVEKIKKDTGCKIRVSGDNMPACTSSSDEVIEIEGSVSSVKKA 210
L+ + G VIGK G+V+ +I+K T I +S D+++E+ G VSSV+ A
Sbjct: 399 LLVSSKVIGCVIGKSGSVINEIRKRTNANICIS-------KGKKDDLVEVSGEVSSVRDA 451
Query: 211 LIAVSRRLQDCSAADRIKMVGSKP 234
LI + RL++ D+ + KP
Sbjct: 452 LIQIVLRLREDVLGDKDSVATRKP 475
>AT3G04610.1 | Symbols: FLK | RNA-binding KH domain-containing
protein | chr3:1250762-1254272 REVERSE LENGTH=577
Length = 577
Score = 90.5 bits (223), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 95/176 (53%), Gaps = 14/176 (7%)
Query: 46 GHVAFRILCHSSRIGGVIGKSGAVIKNLQQSTGAKIRVEDAPAESPDRVIMVIADAALTG 105
G FR+L + ++G +IG+ G VIK + + T A+I++ D P + +R +MV
Sbjct: 185 GETVFRMLVPAQKVGSIIGRKGDVIKKIVEETRARIKILDGPPGTTERAVMV-------- 236
Query: 106 RCHIGGEEIEFS--KAQEALVKVFDRILEVAEEMGGIEIGDRAVSCRLVADAAQAGSVIG 163
G EE E S + + L++V RI++ + VS RL+ A+QAGS+IG
Sbjct: 237 ---SGKEEPESSLPPSMDGLLRVHMRIVDGLDGEASQAPPPSKVSTRLLVPASQAGSLIG 293
Query: 164 KGGTVVEKIKKDTGCKIRVSG-DNMPACTSSSDEVIEIEGSVSSVKKALIAVSRRL 218
K G V+ I++ + C +RV G +++P D V+E+ G +SV +AL ++ L
Sbjct: 294 KQGGTVKAIQEASACIVRVLGSEDLPVFALQDDRVVEVVGEPTSVHRALELIASHL 349
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 85/174 (48%), Gaps = 8/174 (4%)
Query: 298 EVTFKIICSNDRXXXXXXXXXXXXRALQSETGATISIGPAVADCDDRLISITASENPESR 357
E F+++ + + + ET A I I +R + ++ E PES
Sbjct: 186 ETVFRMLVPAQKVGSIIGRKGDVIKKIVEETRARIKILDGPPGTTERAVMVSGKEEPESS 245
Query: 358 YSPAQKAVVLVFSRSVEAAIEKGIDSGLNKG---SSVTARLVVPSNQVGCLLGKGGVIVS 414
P+ ++ V R V+ G+D ++ S V+ RL+VP++Q G L+GK G V
Sbjct: 246 LPPSMDGLLRVHMRIVD-----GLDGEASQAPPPSKVSTRLLVPASQAGSLIGKQGGTVK 300
Query: 415 EMRRATGASIRIIGADQVPKCASDNDQVVQISGEFSNVQDALYNATGRLRDNLL 468
++ A+ +R++G++ +P A +D+VV++ GE ++V AL LR L+
Sbjct: 301 AIQEASACIVRVLGSEDLPVFALQDDRVVEVVGEPTSVHRALELIASHLRKFLV 354
>AT4G26000.1 | Symbols: PEP | RNA-binding KH domain-containing
protein | chr4:13197280-13199539 FORWARD LENGTH=495
Length = 495
Score = 80.9 bits (198), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 96/178 (53%), Gaps = 16/178 (8%)
Query: 42 PTPSGHVAFRILCHSSRIGGVIGKSGAVIKNLQQSTGAKIRVEDAPAESPDRVIMVIADA 101
P G FR++ +++G +IG+ G IK + + T A+I+V D P +PDR++++
Sbjct: 68 PGWPGDCVFRMIVPVTKVGAIIGRKGDFIKKMCEETRARIKVLDGPVNTPDRIVLI---- 123
Query: 102 ALTGRCHIGGEEIE--FSKAQEALVKVFDRI--LEVAEEMGGIEIGDRAVSCRLVADAAQ 157
G EE E S A +A+++VF R+ L ++ G S RL+ + Q
Sbjct: 124 -------SGKEEPEAYMSPAMDAVLRVFRRVSGLPDNDDDDVQNAGSVFSSVRLLVASTQ 176
Query: 158 AGSVIGKGGTVVEKIKKDTGCKIRV-SGDNMPACTSSSDEVIEIEGSVSSVKKALIAV 214
A ++IGK G++++ I +++G +R+ S + P + + +++++G + KAL A+
Sbjct: 177 AINLIGKQGSLIKSIVENSGASVRILSEEETPFYAAQDERIVDLQGEALKILKALEAI 234
Score = 73.2 bits (178), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 49/146 (33%), Positives = 77/146 (52%), Gaps = 2/146 (1%)
Query: 327 ETGATISIGPAVADCDDRLISITASENPESRYSPAQKAVVLVFSRSVEAAIEKGIDSGLN 386
ET A I + + DR++ I+ E PE+ SPA AV+ VF R V + D N
Sbjct: 102 ETRARIKVLDGPVNTPDRIVLISGKEEPEAYMSPAMDAVLRVFRR-VSGLPDNDDDDVQN 160
Query: 387 KGSSVTA-RLVVPSNQVGCLLGKGGVIVSEMRRATGASIRIIGADQVPKCASDNDQVVQI 445
GS ++ RL+V S Q L+GK G ++ + +GAS+RI+ ++ P A+ ++++V +
Sbjct: 161 AGSVFSSVRLLVASTQAINLIGKQGSLIKSIVENSGASVRILSEEETPFYAAQDERIVDL 220
Query: 446 SGEFSNVQDALYNATGRLRDNLLGST 471
GE + AL G LR L+ T
Sbjct: 221 QGEALKILKALEAIVGHLRRFLVDHT 246
>AT5G53060.2 | Symbols: | RNA-binding KH domain-containing protein
| chr5:21515355-21520310 FORWARD LENGTH=198
Length = 198
Score = 72.4 bits (176), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/105 (40%), Positives = 59/105 (56%), Gaps = 8/105 (7%)
Query: 34 SSNHPPSIPTPSGHVAFRILCHSSRIGGVIGKSGAVIKNLQQSTGAKIRVEDAPAESPDR 93
S +HP ++ T +RILCH ++ GGVIGKSG +IK+++Q TGA I V + +R
Sbjct: 58 SKSHPETMAT----TTYRILCHDAKAGGVIGKSGTIIKSIRQHTGAWINVHELVPGDAER 113
Query: 94 VIMVIADAALTGRCHIGGEEIEFSKAQEALVKVFDRILEVAEEMG 138
+I + + R G FS AQEAL V DRILE + G
Sbjct: 114 IIEISDNR----RRDPDGRMPSFSPAQEALFSVHDRILESEAQFG 154
>AT2G03110.1 | Symbols: | RNA binding;nucleic acid binding |
chr2:935432-935975 FORWARD LENGTH=153
Length = 153
Score = 63.2 bits (152), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 52/80 (65%), Gaps = 3/80 (3%)
Query: 389 SSVTARLVVPSNQVGCLLGKGGVIVSEMRRATGASIRIIGADQVPKC--ASDNDQVVQIS 446
+ VT R++VPS+Q+G L+GKGG I+ +R T A IR + D +P C A +D+++QI
Sbjct: 71 TVVTVRMLVPSDQIGYLIGKGGPIIQTLRNDTNAQIR-VRNDNLPMCALALSHDELLQII 129
Query: 447 GEFSNVQDALYNATGRLRDN 466
G+ S V++ALY L +N
Sbjct: 130 GDPSAVREALYQVAFLLYNN 149
Score = 62.8 bits (151), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 50/80 (62%), Gaps = 2/80 (2%)
Query: 143 GDRAVSCRLVADAAQAGSVIGKGGTVVEKIKKDTGCKIRVSGDNMPAC--TSSSDEVIEI 200
G V+ R++ + Q G +IGKGG +++ ++ DT +IRV DN+P C S DE+++I
Sbjct: 69 GQTVVTVRMLVPSDQIGYLIGKGGPIIQTLRNDTNAQIRVRNDNLPMCALALSHDELLQI 128
Query: 201 EGSVSSVKKALIAVSRRLQD 220
G S+V++AL V+ L +
Sbjct: 129 IGDPSAVREALYQVAFLLYN 148