Miyakogusa Predicted Gene
- Lj6g3v2193420.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj6g3v2193420.1 tr|D7KHT7|D7KHT7_ARALL KH domain-containing
protein OS=Arabidopsis lyrata subsp. lyrata
GN=ARALYDRAF,32.09,3e-18,KH_1,K Homology domain, type 1; Eukaryotic
type KH-domain (KH-domain type I),NULL; KH_TYPE_1,K Homol,CUFF.60864.1
(2100 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC74444 similar to UniRef100_A7QM31 Cluster: Chromosome... 680 0.0
gnl|LJGI|TC75431 similar to UniRef100_A2Q1N9 Cluster: KH, type 1... 438 e-122
gnl|LJGI|DC595418 similar to UniRef100_A2Q1N9 Cluster: KH, type ... 212 7e-54
gnl|LJGI|BW598217 weakly similar to UniRef100_A7QM31 Cluster: Ch... 70 6e-11
gnl|LJGI|TC79337 weakly similar to UniRef100_A7QM31 Cluster: Chr... 68 2e-10
>gnl|LJGI|TC74444 similar to UniRef100_A7QM31 Cluster: Chromosome undetermined
scaffold_123, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome undetermined scaffold_123,
whole genome shotgun sequence - Vitis vinifera (Grape),
partial (9%)
Length = 510
Score = 680 bits (343), Expect = 0.0
Identities = 343/343 (100%)
Strand = Plus / Plus
Query: 1 atgggaagcagttttttctctccgccggcgaagcgttccatgctcggaatatccgacccg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 168 atgggaagcagttttttctctccgccggcgaagcgttccatgctcggaatatccgacccg 227
Query: 61 gacccgtattccccaaacgggtcatccaagcgcgcgaggtcctccaaccaccctccgtca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 228 gacccgtattccccaaacgggtcatccaagcgcgcgaggtcctccaaccaccctccgtca 287
Query: 121 atccccacaccctccggccacgtcgccttccgcatcctctgtcactcctcccgcatcggc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 atccccacaccctccggccacgtcgccttccgcatcctctgtcactcctcccgcatcggc 347
Query: 181 ggcgttatcggaaagtctggcgcagtcataaaaaacctccagcaatccaccggtgctaag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 ggcgttatcggaaagtctggcgcagtcataaaaaacctccagcaatccaccggtgctaag 407
Query: 241 atccgagtcgaggatgctccggcagagtcgcctgatcgagtcattatggtcatcgccgac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 atccgagtcgaggatgctccggcagagtcgcctgatcgagtcattatggtcatcgccgac 467
Query: 301 gctgccttgactggcaggtgccatatcggcggggaggagattg 343
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 gctgccttgactggcaggtgccatatcggcggggaggagattg 510
>gnl|LJGI|TC75431 similar to UniRef100_A2Q1N9 Cluster: KH, type 1; n=1; Medicago
truncatula|Rep: KH, type 1 - Medicago truncatula (Barrel
medic), partial (24%)
Length = 798
Score = 438 bits (221), Expect = e-122
Identities = 221/221 (100%)
Strand = Plus / Plus
Query: 1777 cgccctccttcacatacttttcctcaagatattgatcatcttgctcgtcctagaaattta 1836
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cgccctccttcacatacttttcctcaagatattgatcatcttgctcgtcctagaaattta 60
Query: 1837 gatcatcctccttcacatactttttctcaagacattgatcatcttgctcgatctagaaat 1896
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gatcatcctccttcacatactttttctcaagacattgatcatcttgctcgatctagaaat 120
Query: 1897 ttagatcatcctccttcacatactttccctcaagacattgatcatcgtgctcgtactaga 1956
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ttagatcatcctccttcacatactttccctcaagacattgatcatcgtgctcgtactaga 180
Query: 1957 catttagatcgttcttcttcaccagggctatggacaccacc 1997
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 catttagatcgttcttcttcaccagggctatggacaccacc 221
Score = 228 bits (115), Expect = 1e-58
Identities = 166/183 (90%)
Strand = Plus / Plus
Query: 1721 cttcacatacttttcctcaagacattgatcatcttgcttttactagaaatttagaccgcc 1780
|||||||||||||||||||||| ||||||||||||||| | ||||||||||||| | |
Sbjct: 8 cttcacatacttttcctcaagatattgatcatcttgctcgtcctagaaatttagatcatc 67
Query: 1781 ctccttcacatacttttcctcaagatattgatcatcttgctcgtcctagaaatttagatc 1840
||||||||||||||||| ||||||| ||||||||||||||||| |||||||||||||||
Sbjct: 68 ctccttcacatactttttctcaagacattgatcatcttgctcgatctagaaatttagatc 127
Query: 1841 atcctccttcacatactttttctcaagacattgatcatcttgctcgatctagaaatttag 1900
||||||||||||||||||| |||||||||||||||||| |||||| ||||| ||||||
Sbjct: 128 atcctccttcacatactttccctcaagacattgatcatcgtgctcgtactagacatttag 187
Query: 1901 atc 1903
|||
Sbjct: 188 atc 190
Score = 220 bits (111), Expect = 3e-56
Identities = 165/183 (90%)
Strand = Plus / Plus
Query: 1593 tccttcacatacttttcctcaagaaattgatcatcttgctcttactagaaatttagaccg 1652
|||||||||||||||||||||||| |||||||||||||||| | ||||||||||||| |
Sbjct: 6 tccttcacatacttttcctcaagatattgatcatcttgctcgtcctagaaatttagatca 65
Query: 1653 tccttcttcacgtacttttcctcaagacattgatcatcttgctctttctagaaatttaga 1712
|||| |||||| ||||||| |||||||||||||||||||||||| ||||||||||||||
Sbjct: 66 tcctccttcacatactttttctcaagacattgatcatcttgctcgatctagaaatttaga 125
Query: 1713 ccgtccttcttcacatacttttcctcaagacattgatcatcttgcttttactagaaattt 1772
| |||| ||||||||||||| ||||||||||||||||||| |||| ||||||| ||||
Sbjct: 126 tcatcctccttcacatactttccctcaagacattgatcatcgtgctcgtactagacattt 185
Query: 1773 aga 1775
|||
Sbjct: 186 aga 188
Score = 168 bits (85), Expect = 9e-41
Identities = 165/191 (86%), Gaps = 3/191 (1%)
Strand = Plus / Plus
Query: 1539 acatacttttcctcaagacattgatcatgttgctcttaccagaaatttagaccgtcct-- 1596
|||||||||||||||||| ||||||||| |||||| | | ||||||||||| | ||||
Sbjct: 12 acatacttttcctcaagatattgatcatcttgctcgtcctagaaatttagatcatcctcc 71
Query: 1597 -tcacatacttttcctcaagaaattgatcatcttgctcttactagaaatttagaccgtcc 1655
|||||||||||| ||||||| |||||||||||||||| ||||||||||||| | |||
Sbjct: 72 ttcacatactttttctcaagacattgatcatcttgctcgatctagaaatttagatcatcc 131
Query: 1656 ttcttcacgtacttttcctcaagacattgatcatcttgctctttctagaaatttagaccg 1715
| |||||| |||||| ||||||||||||||||||| ||||| | ||||| ||||||| ||
Sbjct: 132 tccttcacatactttccctcaagacattgatcatcgtgctcgtactagacatttagatcg 191
Query: 1716 tccttcttcac 1726
| |||||||||
Sbjct: 192 ttcttcttcac 202
>gnl|LJGI|DC595418 similar to UniRef100_A2Q1N9 Cluster: KH, type 1; n=1; Medicago
truncatula|Rep: KH, type 1 - Medicago truncatula (Barrel
medic), partial (7%)
Length = 119
Score = 212 bits (107), Expect = 7e-54
Identities = 116/119 (97%)
Strand = Plus / Plus
Query: 1344 gttttcgaatgtgcaagatgcattatataatgcaactggtagactaagagataatctttt 1403
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gttttccaatgtgcaagatgcattatataatgcaactggtagactaagagataatctttt 60
Query: 1404 gggcagcacacagggtagtgctgcaacaaggagcctttcctctgttcgagctgatacca 1462
||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 61 gggcagcacacaggggagtgctgcaacaaggagcctttcctctgttccagctgatacca 119
>gnl|LJGI|BW598217 weakly similar to UniRef100_A7QM31 Cluster: Chromosome undetermined
scaffold_123, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome undetermined scaffold_123, whole
genome shotgun sequence - Vitis vinifera (Grape), partial
(6%)
Length = 478
Score = 69.9 bits (35), Expect = 6e-11
Identities = 86/103 (83%)
Strand = Plus / Plus
Query: 1313 ataatgatcaagtggtacagatatcaggagagttttcgaatgtgcaagatgcattatata 1372
||||||||||| ||||||| |||||| || |||| | ||||| ||||||||||||||||
Sbjct: 72 ataatgatcaaatggtacacatatcatgacagttctgaaatgttcaagatgcattatata 131
Query: 1373 atgcaactggtagactaagagataatcttttgggcagcacaca 1415
| || ||||| |||| ||||||||| ||| | |||||||||
Sbjct: 132 aagctactggaagacagcgagataatcattttgacagcacaca 174
>gnl|LJGI|TC79337 weakly similar to UniRef100_A7QM31 Cluster: Chromosome undetermined
scaffold_123, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome undetermined scaffold_123,
whole genome shotgun sequence - Vitis vinifera (Grape),
partial (16%)
Length = 801
Score = 67.9 bits (34), Expect = 2e-10
Identities = 100/122 (81%)
Strand = Plus / Plus
Query: 825 tggagttcattcattgccagctgaagttaatagagtttcaccccgggaatcaaaagcact 884
||||||| | |||||| |||||||||| || ||||| || ||| || ||| ||||||
Sbjct: 680 tggagttaactcattgtcagctgaagtcaacagagtctcggcccttgatccaagagcact 739
Query: 885 tcagcaggaagtcaccttcaaaattatatgttcaaatgatagagttggaggtgttattgg 944
|||| ||||||| ||||| | |||| | |||||||||||||||||||| | ||| |||||
Sbjct: 740 tcagaaggaagttacctttagaattctttgttcaaatgatagagttggtgctgtaattgg 799
Query: 945 aa 946
||
Sbjct: 800 aa 801