Miyakogusa Predicted Gene

Lj6g3v2007020.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v2007020.1 Non Chatacterized Hit- tr|I3SCF8|I3SCF8_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2 SV=1,98.67,0,seg,NULL;
no description,Nucleic acid-binding, OB-fold; Nucleic acid-binding
proteins,Nucleic acid-b,CUFF.60500.1
         (150 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G33845.1 | Symbols:  | Nucleic acid-binding, OB-fold-like pro...   190   4e-49
AT1G23750.1 | Symbols:  | Nucleic acid-binding, OB-fold-like pro...   174   2e-44
AT4G28440.1 | Symbols:  | Nucleic acid-binding, OB-fold-like pro...   171   1e-43
AT1G03810.1 | Symbols:  | Nucleic acid-binding, OB-fold-like pro...   159   9e-40
AT1G10590.2 | Symbols:  | Nucleic acid-binding, OB-fold-like pro...   155   9e-39
AT1G10590.1 | Symbols:  | Nucleic acid-binding, OB-fold-like pro...   155   9e-39
AT1G10590.3 | Symbols:  | Nucleic acid-binding, OB-fold-like pro...   155   1e-38

>AT2G33845.1 | Symbols:  | Nucleic acid-binding, OB-fold-like
           protein | chr2:14317781-14318712 FORWARD LENGTH=182
          Length = 182

 Score =  190 bits (482), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 91/136 (66%), Positives = 107/136 (78%), Gaps = 5/136 (3%)

Query: 15  KRKPVFTKVDQLKPGTNGHTLVAKVLSSDTVLHKXXXXXXXXXXXQNIRPTVIAECLIGD 74
           K+KPVF KVDQLKPGT+GHTL  KV+  ++V  K            ++RP  I+ECL+GD
Sbjct: 52  KKKPVFVKVDQLKPGTSGHTLTVKVVDQNSVPQKPGAASSS-----HLRPARISECLVGD 106

Query: 75  DTATVIFTARNEQVELMKPGTTVIIRNAKIDMFKGSIRLAVDKWGRIEVTEPANFVVKED 134
           +TA ++FTARN+QVELMKPG TV +RNAKIDMFKGS+RLAVDKWGRIE TEPA+  VKED
Sbjct: 107 ETACILFTARNDQVELMKPGATVNLRNAKIDMFKGSMRLAVDKWGRIEATEPADITVKED 166

Query: 135 TNLSQVEYELVNVVEE 150
            NLS VEYELVNVVEE
Sbjct: 167 NNLSLVEYELVNVVEE 182


>AT1G23750.1 | Symbols:  | Nucleic acid-binding, OB-fold-like
           protein | chr1:8400638-8401171 FORWARD LENGTH=137
          Length = 137

 Score =  174 bits (441), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 82/141 (58%), Positives = 107/141 (75%), Gaps = 6/141 (4%)

Query: 9   NTNKPAKRKPVFTKVDQLKPGTNGHTLVAKVLSSDTVLHKXXXXXXXXXXXQNIRPTVIA 68
           ++ K   +KP FTKVDQL+PGT+GH +  K++S+  VL K              R   I+
Sbjct: 3   DSTKAGLKKPAFTKVDQLRPGTSGHNVNVKIVSTKMVLQKGRADG------PQARQLRIS 56

Query: 69  ECLIGDDTATVIFTARNEQVELMKPGTTVIIRNAKIDMFKGSIRLAVDKWGRIEVTEPAN 128
           EC++GD+T  ++FTARN+QV+LMK G+TV +RNAKIDM+KGS+RLAVDKWGR+EVTEPA+
Sbjct: 57  ECIVGDETGVIVFTARNDQVDLMKEGSTVTLRNAKIDMYKGSMRLAVDKWGRVEVTEPAS 116

Query: 129 FVVKEDTNLSQVEYELVNVVE 149
           F VKEDTN+S +EYELVNVVE
Sbjct: 117 FKVKEDTNMSLIEYELVNVVE 137


>AT4G28440.1 | Symbols:  | Nucleic acid-binding, OB-fold-like
           protein | chr4:14060054-14060970 FORWARD LENGTH=153
          Length = 153

 Score =  171 bits (434), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 80/133 (60%), Positives = 100/133 (75%)

Query: 15  KRKPVFTKVDQLKPGTNGHTLVAKVLSSDTVLHKXXXXXXXXXXXQNIRPTVIAECLIGD 74
           KRKPVF KV+QLKPGT GHTL  KV+ ++ V+             +  +P+ I ECLIGD
Sbjct: 17  KRKPVFVKVEQLKPGTTGHTLTVKVIEANIVVPVTRKTRPASSLSRPSQPSRIVECLIGD 76

Query: 75  DTATVIFTARNEQVELMKPGTTVIIRNAKIDMFKGSIRLAVDKWGRIEVTEPANFVVKED 134
           +T  ++FTARN+QV+LMKPG TVI+RN++IDMFKG++RL VDKWGRIE T  A+F VKED
Sbjct: 77  ETGCILFTARNDQVDLMKPGATVILRNSRIDMFKGTMRLGVDKWGRIEATGAASFTVKED 136

Query: 135 TNLSQVEYELVNV 147
            NLS VEYEL+NV
Sbjct: 137 NNLSLVEYELINV 149


>AT1G03810.1 | Symbols:  | Nucleic acid-binding, OB-fold-like
           protein | chr1:958759-959609 FORWARD LENGTH=143
          Length = 143

 Score =  159 bits (401), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 78/131 (59%), Positives = 95/131 (72%), Gaps = 3/131 (2%)

Query: 15  KRKPVFTKVDQLKPGTNGHTLVAKVLSSDTVLHKXXXXXXXXXXXQNIRPTVIAECLIGD 74
           KRKPVF KVDQLKPGT+GHTL+ KVL S+ V              Q I    IAECLIGD
Sbjct: 14  KRKPVFVKVDQLKPGTSGHTLIVKVLESNPV---KPAIRKSSLTQQPISSPRIAECLIGD 70

Query: 75  DTATVIFTARNEQVELMKPGTTVIIRNAKIDMFKGSIRLAVDKWGRIEVTEPANFVVKED 134
           DT  ++FTARN+QV+LMK G TVI+RNAKID+FK ++R+AVD+WGRIE+T P +F V   
Sbjct: 71  DTGCILFTARNDQVDLMKTGATVILRNAKIDLFKDTMRMAVDRWGRIEITGPVSFEVNRA 130

Query: 135 TNLSQVEYELV 145
            NLS VEYE++
Sbjct: 131 NNLSLVEYEVI 141


>AT1G10590.2 | Symbols:  | Nucleic acid-binding, OB-fold-like
           protein | chr1:3502324-3502991 REVERSE LENGTH=139
          Length = 139

 Score =  155 bits (392), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 75/135 (55%), Positives = 100/135 (74%), Gaps = 5/135 (3%)

Query: 14  AKRKPVFTKVDQLKPGTNGHTLVAKVLSSDTVLHKXXXXXXXXXXXQNIRPTVIAECLIG 73
           A RKPVFTKV++L+PGTNGH+L  KV+++  V+ +           Q      IAECL+G
Sbjct: 7   ALRKPVFTKVNELRPGTNGHSLNVKVVNTKMVMQRGGGRPMGPQSRQ----MRIAECLVG 62

Query: 74  DDTATVIFTARNEQVELMKPGTTVIIRNAKIDMFKGSIRLAVDKWGRIEVT-EPANFVVK 132
           D+T  +IFTARN+QV++MK G+ V +RNAKIDM+KGS+RLAVD+WGR+EV  EP +  VK
Sbjct: 63  DETGIIIFTARNDQVDMMKEGSVVTLRNAKIDMYKGSMRLAVDRWGRVEVAEEPTDITVK 122

Query: 133 EDTNLSQVEYELVNV 147
           +D NLS +EYELV+V
Sbjct: 123 DDNNLSLIEYELVSV 137


>AT1G10590.1 | Symbols:  | Nucleic acid-binding, OB-fold-like
           protein | chr1:3502324-3502991 REVERSE LENGTH=139
          Length = 139

 Score =  155 bits (392), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 75/135 (55%), Positives = 100/135 (74%), Gaps = 5/135 (3%)

Query: 14  AKRKPVFTKVDQLKPGTNGHTLVAKVLSSDTVLHKXXXXXXXXXXXQNIRPTVIAECLIG 73
           A RKPVFTKV++L+PGTNGH+L  KV+++  V+ +           Q      IAECL+G
Sbjct: 7   ALRKPVFTKVNELRPGTNGHSLNVKVVNTKMVMQRGGGRPMGPQSRQ----MRIAECLVG 62

Query: 74  DDTATVIFTARNEQVELMKPGTTVIIRNAKIDMFKGSIRLAVDKWGRIEVT-EPANFVVK 132
           D+T  +IFTARN+QV++MK G+ V +RNAKIDM+KGS+RLAVD+WGR+EV  EP +  VK
Sbjct: 63  DETGIIIFTARNDQVDMMKEGSVVTLRNAKIDMYKGSMRLAVDRWGRVEVAEEPTDITVK 122

Query: 133 EDTNLSQVEYELVNV 147
           +D NLS +EYELV+V
Sbjct: 123 DDNNLSLIEYELVSV 137


>AT1G10590.3 | Symbols:  | Nucleic acid-binding, OB-fold-like
           protein | chr1:3502324-3503033 REVERSE LENGTH=153
          Length = 153

 Score =  155 bits (391), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 75/135 (55%), Positives = 100/135 (74%), Gaps = 5/135 (3%)

Query: 14  AKRKPVFTKVDQLKPGTNGHTLVAKVLSSDTVLHKXXXXXXXXXXXQNIRPTVIAECLIG 73
           A RKPVFTKV++L+PGTNGH+L  KV+++  V+ +           Q      IAECL+G
Sbjct: 21  ALRKPVFTKVNELRPGTNGHSLNVKVVNTKMVMQRGGGRPMGPQSRQ----MRIAECLVG 76

Query: 74  DDTATVIFTARNEQVELMKPGTTVIIRNAKIDMFKGSIRLAVDKWGRIEVT-EPANFVVK 132
           D+T  +IFTARN+QV++MK G+ V +RNAKIDM+KGS+RLAVD+WGR+EV  EP +  VK
Sbjct: 77  DETGIIIFTARNDQVDMMKEGSVVTLRNAKIDMYKGSMRLAVDRWGRVEVAEEPTDITVK 136

Query: 133 EDTNLSQVEYELVNV 147
           +D NLS +EYELV+V
Sbjct: 137 DDNNLSLIEYELVSV 151