Miyakogusa Predicted Gene

Lj6g3v2006300.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v2006300.1 tr|Q0DBU7|Q0DBU7_ORYSJ Os06g0525000 protein
(Fragment) OS=Oryza sativa subsp. japonica
GN=Os06g05250,74.07,4e-19,seg,NULL,CUFF.60454.1
         (119 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g014970.1 | transmembrane protein, putative | HC | chr2:43...   110   3e-25

>Medtr2g014970.1 | transmembrane protein, putative | HC |
           chr2:4368442-4370959 | 20130731
          Length = 113

 Score =  110 bits (275), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 59/109 (54%), Positives = 65/109 (59%), Gaps = 12/109 (11%)

Query: 3   ENNPKTKTHDLPLPEXXXXXXXXXXXNGDHGSTKLTPPKRHFNPPESEIPDAATLKDQWR 62
           E NPKTKT   P              + DHGSTK +  K H NP E+ IPD+ATL+DQW+
Sbjct: 6   EINPKTKTPLQP------------SSSADHGSTKFSGHKSHINPAETAIPDSATLRDQWK 53

Query: 63  YAIRQYSKWYSHAWGTAIXXXXXXXXXXWLIKGENPIPSFRSNNAQSHD 111
           YA RQY KWYSHAWGTAI          W IKGENPIPSF S    SHD
Sbjct: 54  YATRQYGKWYSHAWGTAILAGAAFFALGWFIKGENPIPSFNSKPNSSHD 102