Miyakogusa Predicted Gene

Lj6g3v2006300.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v2006300.1 tr|Q0DBU7|Q0DBU7_ORYSJ Os06g0525000 protein
(Fragment) OS=Oryza sativa subsp. japonica
GN=Os06g05250,74.07,4e-19,seg,NULL,CUFF.60454.1
         (119 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G28540.1 | Symbols:  | unknown protein; Has 25 Blast hits to ...    91   1e-19

>AT1G28540.1 | Symbols:  | unknown protein; Has 25 Blast hits to 25
           proteins in 10 species: Archae - 0; Bacteria - 0;
           Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other
           Eukaryotes - 0 (source: NCBI BLink). |
           chr1:10035696-10036007 FORWARD LENGTH=103
          Length = 103

 Score = 91.3 bits (225), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 40/66 (60%), Positives = 51/66 (77%)

Query: 41  KRHFNPPESEIPDAATLKDQWRYAIRQYSKWYSHAWGTAIXXXXXXXXXXWLIKGENPIP 100
           KR++NPPES  PD ATL++QW++AIRQYSKWYSHAWGTAI          W+IKG NP+P
Sbjct: 31  KRYYNPPESVNPDQATLREQWKFAIRQYSKWYSHAWGTAILAGGFFFGLGWIIKGSNPLP 90

Query: 101 SFRSNN 106
           S +S++
Sbjct: 91  SLQSSS 96