Miyakogusa Predicted Gene

Lj6g3v1954020.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1954020.1 Non Characterized Hit- tr|Q5N168|Q5N168_SYNP6
Putative uncharacterized protein OS=Synechococcus sp.
,33.65,5e-19,seg,NULL; CbiQ,ABC/ECF transporter, transmembrane
component,CUFF.60324.1
         (254 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g021220.1 | cobalt ion transmembrane transporters protein ...   414   e-116
Medtr2g021155.1 | F-box protein interaction domain protein | LC ...    62   6e-10

>Medtr2g021220.1 | cobalt ion transmembrane transporters protein |
           HC | chr2:7181514-7176240 | 20130731
          Length = 375

 Score =  414 bits (1063), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 203/254 (79%), Positives = 215/254 (84%)

Query: 1   MRFGLVIYLTLLSIWVLPRSTWTDQLGRVYLLSGLLFITSGLGADGAPALVQLRTPPPAV 60
           MRFGLV YLTLLSIW+LPR+ W DQLGRVY LS LLFIT GLG+DG PALVQ RTPPPAV
Sbjct: 122 MRFGLVAYLTLLSIWILPRNAWKDQLGRVYFLSALLFITIGLGSDGVPALVQSRTPPPAV 181

Query: 61  TGLPNLPVSLTGYSYLISKLGPLTFTRKGLSVASTVACLTFTVFQSASLCLTTTTPEQLA 120
           +GLPNLP+SLTGYSY+ISKLGPLTFTRKGLSV STVACLTFTVFQSASLCLTTTTPEQLA
Sbjct: 182 SGLPNLPISLTGYSYVISKLGPLTFTRKGLSVGSTVACLTFTVFQSASLCLTTTTPEQLA 241

Query: 121 FALRWFMLPLRYXXXXXXXXXXXXXXXXXXXXXXFDEVRNLAMGIVSRRVNWKQLTVMET 180
            ALRWFMLPLRY                      FDEVRN+A+GIVSRRVNWKQLTVMET
Sbjct: 242 SALRWFMLPLRYIGVSVSEIVLTLLLSLRFISLVFDEVRNIALGIVSRRVNWKQLTVMET 301

Query: 181 IDIFFNYFRRIFKNIFSHAEQISQAMIVRGFKGDVGSQKIYFLSEPSFGMADIICLLCLK 240
           IDIFFNYFRRIFKNIFSHAEQISQAMI RGFKGDV + KIYFLSE SFGMADI+CLL L 
Sbjct: 302 IDIFFNYFRRIFKNIFSHAEQISQAMIARGFKGDVDNHKIYFLSESSFGMADIVCLLNLT 361

Query: 241 IVIGAALLSEYYFV 254
           +VIGA+LLSEYY V
Sbjct: 362 VVIGASLLSEYYLV 375


>Medtr2g021155.1 | F-box protein interaction domain protein | LC |
           chr2:7162258-7155965 | 20130731
          Length = 958

 Score = 61.6 bits (148), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 32/60 (53%), Positives = 39/60 (65%), Gaps = 3/60 (5%)

Query: 7   IYLTLLSIWVLPRSTWTDQLGRVYLLSGLLFITSGLGADGAPALVQLRTPPPAVTGLPNL 66
           +YL + S++        DQLG+VY L  LLFIT GLG+DG P LVQ RTPPPAV    N+
Sbjct: 429 VYLLIHSLYYFDHQ---DQLGQVYFLLALLFITLGLGSDGVPVLVQSRTPPPAVRDYKNI 485